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mvdbeek
6d6e1a3e49
Avoids:
```
galaxy.jobs.runners.kubernetes ERROR 2019-06-16 19:06:43,961 No Jobs are available under expected selector app=galaxy-gx-short-id-5
galaxy.jobs.runners ERROR 2019-06-16 19:06:43,962 Unhandled exception checking active jobs
Traceback (most recent call last):
File "/Users/mvandenb/src/galaxy/lib/galaxy/jobs/runners/__init__.py", line 696, in monitor
self.check_watched_items()
File "/Users/mvandenb/src/galaxy/lib/galaxy/jobs/runners/__init__.py", line 723, in check_watched_items
new_async_job_state = self.check_watched_item(async_job_state)
File "/Users/mvandenb/src/galaxy/lib/galaxy/jobs/runners/kubernetes.py", line 447, in check_watched_item
with open(job_state.error_file, 'w') as error_file:
FileNotFoundError: [Errno 2] No such file or directory: '/Users/mvandenb/temp/tmp1nx5r6_s/000/5/galaxy_5.e'
```
Can be tested with the `test_kill_process` testcase.
.. figure:: https://galaxyproject.org/images/galaxy-logos/galaxy_project_logo.jpg
:alt: Galaxy Logo
The latest information about Galaxy can be found on the `Galaxy Community Hub <https://galaxyproject.org/>`__.
Community support is available at `Galaxy Help <https://help.galaxyproject.org/>`__.
.. image:: https://img.shields.io/badge/chat-irc.freenode.net%23galaxyproject-blue.svg
:target: https://webchat.freenode.net/?channels=galaxyproject
:alt: Chat on irc
.. image:: https://img.shields.io/badge/chat-gitter-blue.svg
:target: https://gitter.im/galaxyproject/Lobby
:alt: Chat on gitter
.. image:: https://img.shields.io/badge/release-documentation-blue.svg
:target: https://docs.galaxyproject.org/en/master/
:alt: Release Documentation
.. image:: https://travis-ci.org/galaxyproject/galaxy.svg?branch=dev
:target: https://travis-ci.org/galaxyproject/galaxy
:alt: Inspect the test results
Galaxy Quickstart
=================
Galaxy requires Python 2.7 To check your python version, run:
.. code:: console
$ python -V
Python 2.7.3
Start Galaxy:
.. code:: console
$ sh run.sh
Once Galaxy completes startup, you should be able to view Galaxy in your
browser at:
http://localhost:8080
Configuration & Tools
=====================
You may wish to make changes from the default configuration. This can be
done in the ``config/galaxy.ini`` file.
Tools can be either installed from the Tool Shed or added manually.
For details please see the `tutorial <https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/>`__.
Note that not all dependencies for the tools provided in the
``tool_conf.xml.sample`` are included. To install them please visit
"Manage dependencies" in the admin interface.
Issues and Galaxy Development
=============================
Please see `CONTRIBUTING.md <CONTRIBUTING.md>`_ .
Roadmap
=============================
Interested in the next steps for Galaxy? Take a look at the `roadmap <https://github.com/galaxyproject/galaxy/projects/8>`__.