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Sergey Golitsynskiy
680db562f7
This fixes the pgcleanup script and an integration test. The test fails because of an error in the script. The error is caused by incorrect string formatting. The new SQLAlchemy URL object extends collections.namedtuple, and a tuple is incompatible with printf-style formating. Ref: https://github.com/sqlalchemy/sqlalchemy/blob/18dbd6aa12a7eca0acb1e2c4f752088e24d6adae/lib/sqlalchemy/engine/url.py#L36 https://docs.python.org/3/library/stdtypes.html#printf-style-string-formatting
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Galaxy Quickstart
=================
Galaxy requires Python 3.6 . To check your Python version, run:
.. code:: console
$ python -V
Python 3.6.10
Start Galaxy:
.. code:: console
$ sh run.sh
Once Galaxy completes startup, you should be able to view Galaxy in your
browser at: http://localhost:8080
For more installation details please see: https://getgalaxy.org/
Documentation is available at: https://docs.galaxyproject.org/
Tutorials on how to use Galaxy, perform scientific analyses with it, develop Galaxy and its tools, and admin a Galaxy server are at: https://training.galaxyproject.org/
Tools
=====
Tools can be either installed from the Tool Shed or added manually.
For details please see the `tutorial <https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/>`__.
Note that not all dependencies for the tools provided in the
``tool_conf.xml.sample`` are included. To install them please visit
"Manage dependencies" in the admin interface.
Issues and Galaxy Development
=============================
Please see `CONTRIBUTING.md <CONTRIBUTING.md>`_ .