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galaxy/test-data
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Leonid Kostrykin 2c2efe8203 Make im8_uint16.tif tiled so we have a test for is_tiled=True
2025-03-25 14:36:42 +01:00
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bwa_mem2_index
Fix directory uploads, use `__FETCH_DATA__` api
2025-02-25 18:10:10 +01:00
exports
Legacy history export tests and infrastructure.
2019-03-11 10:56:25 -04:00
library
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rules
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users
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1.axt
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1.bam
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1.bed
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1.bed.spaces
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1.bedgraph
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1.bigbed
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1.bigwig
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1.csv
WIP: metadata validation.
2023-06-06 10:02:29 +02:00
1.ct
Add connectivity table test dataset
2022-11-18 18:24:54 -05:00
1.customtrack
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1.fasta
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1.fasta.gz
Add test-data
2019-04-07 23:15:35 +02:00
1.fastq
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1.fastqsanger
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1.fastqsanger.bz2
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1.fastqsanger.gz
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1.fastqsolexa
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1.interval
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1.lav
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1.pileup
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1.RData
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1.sam
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1.sam.gz
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1.scf
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1.sff
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1.tabular
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1.tiff
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1.txt
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1.wig
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1.yaml
added sniffer for yaml
2021-09-20 13:07:20 -07:00
2.bed
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2.cram
Update pysam depedency to 0.20.0
2023-01-01 03:37:53 +00:00
2.fasta
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2.tabular
make 2nd column of 2.tabular test data unique values
2021-01-12 13:44:58 +01:00
2gen.fastq
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3.bam
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3.bed
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3.maf
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3unsorted.bam
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4.bed
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4.bed.bz2
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4.bed.gz
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4.bed.zip
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5_Ig-like.gff
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5.bed
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5.gff
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5.gff3
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6.bed
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7.bed
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8.bed
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9.bed
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11.tabular
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454Score.pdf
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454Score.png
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a.tab
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a.txt
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asian_chars_1.txt
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bad.html.gz
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bam_from_sam.bam
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bam_native_from_sam.bam
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bcf_index_metadata_test.bcf
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bcf_index_metadata_test.txt
Fix `metadata_bcf` framework test
2021-03-11 20:21:00 +00:00
biom1_metadata_test.txt
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cat_wrapper_out1.bed
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chebi_57262.v3k.mol
move test data for molecules converters
2021-06-29 14:06:39 +02:00
chopper.h5
Add support for visualizing HDF5 datasets. This contribution is split into two parts: the visualization plugin and backend changes. The client code integrates the h5web visualizer into Galaxy (https://h5web.panosc.eu). The backend changes add the ability to access the contents of a dataset without needing to read the whole dataset, which is essential for large files. It is based on the h5grove API (https://github.com/silx-kit/h5grove).
2023-05-04 20:48:15 -04:00
composite_output_expected_log
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drugbank_drugs.cml
move test data for molecules converters
2021-06-29 14:06:39 +02:00
drugbank_drugs.inchi
move test data for molecules converters
2021-06-29 14:06:39 +02:00
drugbank_drugs.mol
fix the to_inchi converter
2021-07-01 15:08:49 +02:00
drugbank_drugs.mol2
move test data for molecules converters
2021-06-29 14:06:39 +02:00
drugbank_drugs.sdf
move test data for molecules converters
2021-06-29 14:06:39 +02:00
drugbank_drugs.smi
move test data for molecules converters
2021-06-29 14:06:39 +02:00
empty.txt
add empty test file
2021-01-08 12:43:37 +01:00
example-bag.zip
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filter1_in3.sam
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filter1_in5.tab
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filter1_in6.bed
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filter1_inbad.bed
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filter1_test1.bed
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filter1_test2.bed
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filter1_test3.sam
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filter1_test4.bed
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filter1_test5.tab
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filter1_test6.bed
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filter_labels_1.txt
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GRCm38mm10_chr5_34761740-34912521.fa
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html_file.txt
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im1_uint8.png
Add functional test for image_diff
2024-02-27 19:22:33 +01:00
im1_uint8.tif
Add functional test for image_diff
2024-02-27 19:22:33 +01:00
im2_a.png
Add functional test for image_diff
2024-02-27 19:22:33 +01:00
im2_b.png
Add functional test for image_diff
2024-02-27 19:22:33 +01:00
im3_a.png
Fix bugs
2024-02-27 21:54:23 +01:00
im3_b.tif
Fix bugs
2024-02-27 21:54:23 +01:00
im4_float.tif
Add float TIFF test case (fails with Pillow)
2024-03-19 22:03:34 +01:00
im5_uint8.tif
Add support for YXCS axes in asserts/image.py
2024-09-25 13:21:47 +02:00
im6_uint8.tif
Add test for ZCYX axes
2024-09-25 16:59:32 +02:00
im7_uint8.tif
Add test for ZYX axes
2024-09-25 17:11:26 +02:00
im8_uint16.tif
Make im8_uint16.tif tiled so we have a test for is_tiled=True
2025-03-25 14:36:42 +01:00
im9_multiseries.tif
Rename im9_multipage.tif -> im9_multiseries.tif
2025-03-25 14:36:42 +01:00
im_empty.tif
Add test for empty TIFF file (no metadata available)
2024-10-09 08:45:38 +02:00
input_taxonomy.biom1
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joiner_header_in1.tab
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joiner_header_in2.tab
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joiner_out1.bed
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joiner_out2.bed
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joiner_out3.bed
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joiner_out4.bed
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joiner_out5.tab
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joiner_out6.tab
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joiner_out7.tab
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matrix.cool
add test-data for new hdf5 based tool test
2019-02-05 04:23:13 +01:00
MTBLS6.zip
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neostore.zip
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new_element_sort_order.txt
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new_labels_1.txt
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new_labels_2.txt
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new_labels_3.txt
Fix linting and add test
2024-10-21 13:35:15 +02:00
new_labels_bad_1.txt
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new_labels_bad_2.txt
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new_tags_1.txt
add a bit of docs to the add tags tool
2021-04-21 11:45:07 +02:00
phiX.fasta
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qname_sorted.bam
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qualscores.qual454
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qualscores.qualsolid
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random-file
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rgenetics.bed
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rgenetics.bim
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rgenetics.fam
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rgenetics.map
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rgenetics.ped
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safe_relative_symlink.tar
Add test case and use assertRaises()
2019-04-12 12:41:48 +01:00
safetar_with_symlink.tar
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sam_with_header.sam
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selenium-test-notebook.ipynb
Update ruff to 0.6.1
2024-08-17 18:58:38 +01:00
shrimp_cs_test1.csfasta
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simple_line_alternative.txt
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simple_line_no_newline.txt
Fix Galaxy tool/workflow staging and refactor for reuse in Planemo.
2020-08-01 10:34:46 -04:00
simple_line_x2_windows.txt
Display dataset source transform information.
2021-11-12 11:42:21 -05:00
simple_line_x2.txt
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simple_line_x3.txt
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simple_line_x5.txt
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simple_line.txt
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simple_lines_both.txt
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simple_lines_interleaved.txt
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simple.xml
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sort_out1.bed
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sort_out2.bed
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sort_out3.tab
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sort_out4.sam
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test.vcf
Add VCF_BGZIP to VCF converter
2020-07-25 01:33:02 +01:00
test.vcf.gz
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testdir1.tar
SQUASH: Adding in other archive containers
2019-02-26 16:43:23 -07:00
testdir1.tar.gz
SQUASH: Adding in other archive containers
2019-02-26 16:43:23 -07:00
testdir1.zip
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testdir.tar
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tinywga.bed
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tinywga.bim
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tinywga.fam
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tinywga.map
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tinywga.ped
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tinywga.ped.space_to_tab
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unsafe_relative_symlink.tar
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unsafe.tar
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unsafe.zip
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