mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Nicola Soranzo
2cd95c48f6
- Add flake8-import-order to flake8 Pipfile and remove py27-lint-imports and py27-lint-imports-include-list tox envs - Fix most E201 and E202 errors reported by flake8-import-order v0.15, but pin flake8-import-order to v0.14.3 until https://github.com/PyCQA/flake8-import-order/issues/123 is fixed This let us drop 2 jobs on Travis per each job.
136 lines
4.5 KiB
Python
136 lines
4.5 KiB
Python
"""
|
|
"""
|
|
from __future__ import print_function
|
|
|
|
import json
|
|
import unittest
|
|
|
|
import sqlalchemy
|
|
from six import string_types
|
|
|
|
from galaxy.managers.users import UserManager
|
|
from ..unittest_utils import galaxy_mock
|
|
|
|
# =============================================================================
|
|
admin_email = 'admin@admin.admin'
|
|
admin_users = admin_email
|
|
default_password = '123456'
|
|
|
|
|
|
# =============================================================================
|
|
class BaseTestCase(unittest.TestCase):
|
|
|
|
@classmethod
|
|
def setUpClass(cls):
|
|
print('\n', '-' * 20, 'begin class', cls)
|
|
|
|
@classmethod
|
|
def tearDownClass(cls):
|
|
print('\n', '-' * 20, 'end class', cls)
|
|
|
|
def __init__(self, *args):
|
|
unittest.TestCase.__init__(self, *args)
|
|
|
|
def setUp(self):
|
|
self.log('.' * 20, 'begin test', self)
|
|
self.set_up_mocks()
|
|
self.set_up_managers()
|
|
self.set_up_trans()
|
|
|
|
def set_up_mocks(self):
|
|
self.trans = galaxy_mock.MockTrans(admin_users=admin_users)
|
|
self.app = self.trans.app
|
|
|
|
def set_up_managers(self):
|
|
self.user_manager = UserManager(self.app)
|
|
|
|
def set_up_trans(self):
|
|
self.admin_user = self.user_manager.create(email=admin_email, username='admin', password=default_password)
|
|
self.trans.set_user(self.admin_user)
|
|
self.trans.set_history(None)
|
|
|
|
def tearDown(self):
|
|
self.log('.' * 20, 'end test', self, '\n')
|
|
|
|
def log(self, *args, **kwargs):
|
|
print(*args, **kwargs)
|
|
|
|
# ---- additional test types
|
|
TYPES_NEEDING_NO_SERIALIZERS = (string_types, bool, type(None), int, float)
|
|
|
|
def assertKeys(self, obj, key_list):
|
|
self.assertEqual(sorted(obj.keys()), sorted(key_list))
|
|
|
|
def assertHasKeys(self, obj, key_list):
|
|
for key in key_list:
|
|
if key not in obj:
|
|
self.fail('Missing key: ' + key)
|
|
else:
|
|
self.assertTrue(True, 'keys found in object')
|
|
|
|
def assertNullableBasestring(self, item):
|
|
if not isinstance(item, (string_types, type(None))):
|
|
self.fail('Non-nullable basestring: ' + str(type(item)))
|
|
# TODO: len mod 8 and hex re
|
|
self.assertTrue(True, 'is nullable basestring: ' + str(item))
|
|
|
|
def assertEncodedId(self, item):
|
|
if not isinstance(item, string_types):
|
|
self.fail('Non-string: ' + str(type(item)))
|
|
# TODO: len mod 8 and hex re
|
|
self.assertTrue(True, 'is id: ' + item)
|
|
|
|
def assertNullableEncodedId(self, item):
|
|
if item is None:
|
|
self.assertTrue(True, 'nullable id is None')
|
|
else:
|
|
self.assertEncodedId(item)
|
|
|
|
def assertDate(self, item):
|
|
if not isinstance(item, string_types):
|
|
self.fail('Non-string: ' + str(type(item)))
|
|
# TODO: no great way to parse this fully (w/o python-dateutil)
|
|
# TODO: re?
|
|
self.assertTrue(True, 'is date: ' + item)
|
|
|
|
def assertUUID(self, item):
|
|
if not isinstance(item, string_types):
|
|
self.fail('Non-string: ' + str(type(item)))
|
|
# TODO: re for d4d76d69-80d4-4ed7-80c7-211ebcc1a358
|
|
self.assertTrue(True, 'is uuid: ' + item)
|
|
|
|
def assertORMFilter(self, item, msg=None):
|
|
if not isinstance(item, sqlalchemy.sql.elements.BinaryExpression):
|
|
self.fail('Not an orm filter: ' + str(type(item)))
|
|
self.assertTrue(True, msg or ('is an orm filter: ' + str(item)))
|
|
|
|
def assertFnFilter(self, item, msg=None):
|
|
if not item or not callable(item):
|
|
self.fail('Not a fn filter: ' + str(type(item)))
|
|
self.assertTrue(True, msg or ('is a fn filter: ' + str(item)))
|
|
|
|
def assertIsJsonifyable(self, item):
|
|
# TODO: use galaxy's override
|
|
self.assertIsInstance(json.dumps(item), string_types)
|
|
|
|
|
|
class CreatesCollectionsMixin(object):
|
|
|
|
def build_element_identifiers(self, elements):
|
|
identifier_list = []
|
|
for element in elements:
|
|
src = 'hda'
|
|
# if isinstance( element, model.DatasetCollection ):
|
|
# src = 'collection'#?
|
|
# elif isinstance( element, model.LibraryDatasetDatasetAssociation ):
|
|
# src = 'ldda'#?
|
|
encoded_id = self.trans.security.encode_id(element.id)
|
|
identifier_list.append(dict(src=src, name=element.name, id=encoded_id))
|
|
return identifier_list
|
|
|
|
|
|
# =============================================================================
|
|
if __name__ == '__main__':
|
|
# or more generally, nosetests test_resourcemanagers.py -s -v
|
|
unittest.main()
|