Marius van den Beek c1e4b0111a Merge pull request #6911 from jmchilton/workflow_mapping_refactor ...

Refactor collection mapping workflows toward independence from tools.

2018-11-05 14:04:09 +01:00

..

config

Hyperlink DOIs against preferred resolver

2018-05-30 16:49:21 +01:00

dataset_collections

Pre-build collections during mapping to be more recoverable.

2017-11-30 10:02:02 -05:00

datatypes

Rename 2.shuffled.bam to 2.shuffled.unsorted.bam

2018-10-30 09:27:25 +01:00

jobs

Fix errors reported by flake8 3.6.0

2018-10-24 23:22:19 +01:00

managers

Strip unicode control characters from tags

2018-08-26 22:29:23 +02:00

shed_unit

Fix import order everywhere

2017-11-14 19:42:39 +00:00

tools

Merge pull request #6837 from natefoo/inactive-user-jobs

2018-10-11 08:25:29 -04:00

unittest_utils

Setup objectstore for datasets in job handler instead of web thread.

2018-07-30 12:03:44 -04:00

visualizations

Do not encode a rendered Mako template

2018-07-01 00:19:00 -07:00

web

Fix errors reported by flake8 3.6.0

2018-10-24 23:22:19 +01:00

workflows

Refactor collection mapping workflows toward independence from tools.

2018-10-24 09:34:40 -04:00

__init__.py

Fix import order for cron/, scripts/ and test/

2017-09-25 23:44:39 +01:00

test_compression_util.py

Fix security problems when extracting untrusted tar files.

2018-10-04 11:32:52 -04:00

test_galaxy_mapping.py

Replace deprecated assertEquals() method

2018-10-09 12:37:15 +01:00

test_galaxy_transactions.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

test_lazy_process.py

[16.01] More robust test_lazy_process.

2016-03-29 12:24:51 -04:00

test_model_copy.py

Implement simple history copy unit tests.

2018-07-24 13:09:06 -04:00

test_objectstore.py

Fix unit tests

2018-02-04 19:47:00 +01:00

test_remote_shell.py

Share ssh key generation across tests

2018-10-14 18:08:17 +02:00

test_routes.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

test_rule_utils.py

Fix empty handling rule.

2018-07-26 09:52:07 -04:00

test_security_helper.py

Fixed test_security_helper.py, remove encode("utf-8")

2018-06-29 14:28:57 -07:00

test_security_passwords.py

More password encoding handling fixes.

2018-05-23 13:01:05 -04:00

test_sockets.py

Fix I201 errors from flake8-import-order

2016-11-23 18:31:04 +00:00

test_sqlite_utils.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

test_topsort.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

test_utils.py

Strip all control characters from rules

2018-09-27 16:36:31 +02:00

tools_support.py

Fix import order everywhere

2017-11-14 19:42:39 +00:00