galaxy

biotools

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data

Inject filesystem into ToolDataPathFiles for mock-free caching tests

2026-07-02 17:28:52 +02:00

mulled

refactor: some renames

2026-07-04 11:46:05 +00:00

test_data/test_job_fixtures

Add strict Pydantic Job model for TestJob.job

2026-04-22 09:53:59 -04:00

tool_directories/r-tool-dir

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toolbox

toolbox filters: document the filter surface as a ToolFilterContext protocol

2026-07-03 11:28:20 +02:00

upgrade

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

verify

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

__init__.py

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doi_prefixed_citation.xml

Relax legacy doi:-prefixed citation handling (#22795 )

2026-06-01 14:59:48 +02:00

framework_tool_checks.yml

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invalid_citation_26.1.xml

Relax legacy doi:-prefixed citation handling (#22795 )

2026-06-01 14:59:48 +02:00

invalid_citation.xml

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parameter_specification.yml

Merge pull request #22894 from mvdbeek/async-submission-parse-fix

2026-06-17 21:05:49 +02:00

test_assertion_models.py

Apply 2026 black style

2026-01-20 10:25:45 +00:00

test_conda_resolution.py

Apply 2026 black style

2026-01-20 10:25:45 +00:00

test_container_description.py

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test_container_resolution.py

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test_container_shape_lint.py

Move UserToolSource container-shape check to a lint rule

2026-05-21 14:35:28 +02:00

test_credential_parsing.py

Simplify test_credential_parsing to use FunctionalTestToolTestCase

2026-03-18 12:03:33 +01:00

test_cwl_util.py

Add sample_sheet workflow runtime framework tests

2026-03-17 15:15:28 -04:00

test_cwl.py

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test_docker_volumes.py

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test_edam_util.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_format.py

Add galaxy-tool-format CLI entry point

2026-02-23 15:22:14 -05:00

test_hash_function_names_sync.py

Add strict Pydantic Job model for TestJob.job

2026-04-22 09:53:59 -04:00

test_input_models.py

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test_loader_directory.py

Apply 2026 black style

2026-01-20 10:25:45 +00:00

test_ontologies.py

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test_output_checker.py

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test_output_models.py

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test_parameter_convert.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_parameter_cwl_runtime_model.py

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test_parameter_specification_json_schema.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_parameter_specification.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_parameter_test_cases.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_parameter_validator_models.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_parsed_tool_model.py

Keep ParsedTool tests within tool util

2026-05-06 09:02:18 -04:00

test_parsing.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_required_files.py

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test_resolution_cache.py

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test_runtime.py

Fail fast on unknown collection_type instead of silent fallbacks.

2026-02-12 15:58:17 -05:00

test_singularity_util.py

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test_test_definition_parsing.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_test_format_model.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_test_parsing.py

Apply 2026 black style

2026-01-20 10:25:45 +00:00

test_tool_deps.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_tool_linters.py

Merge pull request #23073 from mvdbeek/issue-23071-planemo-lint-runs-rst-validation-on-help-even-when-format-ma

2026-07-06 12:56:28 +01:00

test_tool_loader.py

Prefix XPath expressions with './' in tool loader tests

2026-04-14 15:50:27 +02:00

test_toolbox_view_parsing.py

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test_toolbox_view_sources.py

Apply 2026 black style

2026-01-20 10:25:45 +00:00

test_user_tool_source_fixtures.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_user_tool_source_validation.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_util.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_verify_function.py

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test_verify_hid.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_verify_script.py

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test_verify.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_version.py

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test_wait.py

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test_yaml_parameters.py

Drop min/max from user-defined-tool data parameters

2026-06-19 10:37:42 +02:00

user_tool_source_validation_cases.yml

Make discover_datasets reject under-specified descriptors

2026-06-19 10:21:02 +02:00

util.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00