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John ChiltonandClaude Opus 4.6
32f49d0f6c
Reuses existing tool <tests> blocks to drive execution through the browser tool form, then verifies outputs with verify() infrastructure. Harness infrastructure (navigates_galaxy.py): - run_tool_test() orchestrates: fetch test def via galaxy_interactor, stage data via stage_inputs(), fill form, execute, verify - Data staging uses stage_inputs() from populators (not bespoke upload), supporting files, collections, binary data, and ftype passthrough - Collection staging converts TestCollectionDef dicts to CWL-like job entries; supports paired, list, and list:paired (nested) types - Job-based output tracking: snapshots pre-execution jobs, finds new job after form submit, fetches outputs by dataset ID via job API - Output collection verification: checks collection_type, element count, and verifies each element's content; supports nested sub-collections - Two-pass input filling: shallow params first (conditionals), then deferred params, data params, collection params last - Type detection via smart components: drilldown, checkbox_select, boolean, color, select, text - Multi-data support: detect FormSelection wrapper, clear auto-selected tags before setting desired value - Smart component selectors in navigation.yml for param type detection and interaction (parameter_checkbox_input, parameter_color_input, parameter_text_input, parameter_drilldown_option, etc.) Test data: - Add test cases to gx_data.xml and gx_repeat_boolean.xml - Fix output name in gx_repeat_data.xml (out_file1 -> output) Test suite (test_tool_form_harness.py) — 30 tests: - Scalar params: int, float, text, select, boolean, color - Composite params: conditional (select + boolean), section, repeat, drilldown, multi-select checkboxes, data column, multi-data - Data: single file, optional absent, multi-output, multi-repeats - Collections: paired, list, list:paired input; paired and list:paired output verification; mixed collection+data; optional absent collection - Integration: simple_constructs, implicit_default_conds Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
26 lines
762 B
XML
26 lines
762 B
XML
<tool id="gx_repeat_boolean" name="gx_repeat_boolean" version="1.0.0">
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<command><![CDATA[
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echo '$parameter[0].boolean_parameter' >> '$output'
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]]></command>
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<inputs>
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<repeat name="parameter" title="Repeat Parameter">
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<param name="boolean_parameter" type="boolean" />
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</repeat>
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</inputs>
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<outputs>
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<data name="output" format="txt" />
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</outputs>
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<tests>
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<test>
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<repeat name="parameter">
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<param name="boolean_parameter" value="true" />
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</repeat>
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<output name="output">
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<assert_contents>
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<has_line line="true" />
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</assert_contents>
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</output>
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</test>
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</tests>
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</tool>
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