galaxy

best_regression_subsets.py

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best_regression_subsets.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

compute_q_values.pl

Fixed functional test for 'compute q values' tool - q-value is rounded to 6 significant digits, which shouldn't differ between different runs of the tool.

2011-02-28 14:04:53 -05:00

compute_q_values.xml

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

featureCounter.py

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featureCounter.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

getIndelRates_3way.py

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getIndelRates_3way.xml

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getIndels_2way.xml

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getIndels.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

linear_regression.py

Rounded the outputs of regression to 10 significant digits.

2011-06-27 15:44:59 -04:00

linear_regression.xml

An uninitialized value in R's PDF driver was causing it to sometimes randomly add a few elements to PDF outputs. The bug has been fixed in the buildbot environment and these changes account for that fix.

2011-03-08 11:17:57 -05:00

logistic_regression_vif.py

Suppressed R package-loading messages which were previously being written into stderr

2012-05-25 10:54:03 -04:00

logistic_regression_vif.xml

Added 3 tools: 1) to compute weighted average values based on interval intersections (under Regional variation), 2) to perform logistic regression (under Multiple regression), 3) to compute partial R-squared (under Multiple regression).

2011-11-03 10:49:45 -04:00

maf_cpg_filter.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

maf_cpg_filter.xml

Better determination in tests if a provided input is a DataToolParameter to better handle .gz and .zip uploads and allowing uploads from a sub-directory of test-data/.

2011-02-28 12:16:28 -05:00

microsats_alignment_level.py

Actually change the invocation of sputnik from bx-sputnik as mentioned in my last commit. Thanks Kanwei.

2010-10-07 16:50:37 -04:00

microsats_alignment_level.xml

Convert a bunch of binary requirement tags to package requirements, and change the sputnik tool to call 'sputnik' instead of 'bx-sputnik'.

2010-10-07 16:23:57 -04:00

microsats_mutability.py

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microsats_mutability.xml

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partialR_square.py

Added 3 tools: 1) to compute weighted average values based on interval intersections (under Regional variation), 2) to perform logistic regression (under Multiple regression), 3) to compute partial R-squared (under Multiple regression).

2011-11-03 10:49:45 -04:00

partialR_square.xml

Added 3 tools: 1) to compute weighted average values based on interval intersections (under Regional variation), 2) to perform logistic regression (under Multiple regression), 3) to compute partial R-squared (under Multiple regression).

2011-11-03 10:49:45 -04:00

quality_filter.py

Require Python 2.6+ and remove various compatibility patches for 2.4 and 2.5

2013-04-09 11:57:38 -04:00

quality_filter.xml

Better determination in tests if a provided input is a DataToolParameter to better handle .gz and .zip uploads and allowing uploads from a sub-directory of test-data/.

2011-02-28 12:16:28 -05:00

qv_to_bqv.py

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qv_to_bqv.xml

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rcve.py

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rcve.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

substitution_rates.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

substitution_rates.xml

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substitutions.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

substitutions.xml

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WeightedAverage.py

Added 3 tools: 1) to compute weighted average values based on interval intersections (under Regional variation), 2) to perform logistic regression (under Multiple regression), 3) to compute partial R-squared (under Multiple regression).

2011-11-03 10:49:45 -04:00

WeightedAverage.xml

Added 3 tools: 1) to compute weighted average values based on interval intersections (under Regional variation), 2) to perform logistic regression (under Multiple regression), 3) to compute partial R-squared (under Multiple regression).

2011-11-03 10:49:45 -04:00

windowSplitter.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

windowSplitter.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00