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Actually change the invocation of sputnik from bx-sputnik as mentioned in my last commit. Thanks Kanwei.

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Nate Coraor
2010-10-07 16:50:37 -04:00
parent e05f11bc73
commit 4d636f0562
1 changed files with 1 additions and 1 deletions
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tools/regVariation/microsats_alignment_level.py
+1 -1
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@@ -34,7 +34,7 @@ def main():
fout = open(outfile, "w")
print >>fout, "#Block\tSeq1_Name\tSeq1_Start\tSeq1_End\tSeq1_Type\tSeq1_Length\tSeq1_RepeatNumber\tSeq1_Unit\tSeq2_Name\tSeq2_Start\tSeq2_End\tSeq2_Type\tSeq2_Length\tSeq2_RepeatNumber\tSeq2_Unit"
#sputnik_cmd = os.path.join(os.path.split(sys.argv[0])[0], "sputnik")
sputnik_cmd = "bx-sputnik"
sputnik_cmd = "sputnik"
input = infile.read()
skipped = 0
block_num = 0