galaxy

genebed_maf_to_fasta.xml

Revert 2715.

2008-06-04 13:02:15 +00:00

interval2maf_pairwise.xml

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

interval2maf.py

Fix for interval2maf.py when metadata missing strand column value.

2008-08-12 10:04:28 -04:00

interval2maf.xml

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

interval_maf_to_merged_fasta.py

Better fix for interval_maf_to_merged_fasta when no strand column in input, added functional test.

2008-08-22 10:39:58 -04:00

interval_maf_to_merged_fasta.xml

Better fix for interval_maf_to_merged_fasta when no strand column in input, added functional test.

2008-08-22 10:39:58 -04:00

maf_by_block_number.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

maf_by_block_number.xml

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

maf_filter.py

Misc tool cleanup: eliminated all references to python2.3 / python2.4, imported galaxy eggs in several missed tools. Commented Pattern Matching tool section from tool_conf.xml.sample since tool is not functional. Added job runner info for short read tools in universe_wsgi.ini.sample.

2008-04-25 13:04:55 +00:00

maf_filter.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

maf_limit_size.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

maf_limit_size.xml

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

maf_limit_to_species.py

Misc tool cleanup: eliminated all references to python2.3 / python2.4, imported galaxy eggs in several missed tools. Commented Pattern Matching tool section from tool_conf.xml.sample since tool is not functional. Added job runner info for short read tools in universe_wsgi.ini.sample.

2008-04-25 13:04:55 +00:00

maf_limit_to_species.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

maf_reverse_complement.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

maf_reverse_complement.xml

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

maf_stats_code.py

Changed GALAXY_DATA_INDEX_DIR from an environment variable to a config entry.

2008-03-25 14:09:27 +00:00

maf_stats.py

Small update for maf stats tool.

2008-09-16 13:25:42 -04:00

maf_stats.xml

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

maf_thread_for_species.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

maf_thread_for_species.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

maf_to_bed_code.py

Change database schema to separate Dataset and HistoryDatasetAssociation. This is a significant change, be sure to follow the migration notes exactly.

2008-07-09 17:41:08 +00:00

maf_to_bed.py

Misc tool cleanup: eliminated all references to python2.3 / python2.4, imported galaxy eggs in several missed tools. Commented Pattern Matching tool section from tool_conf.xml.sample since tool is not functional. Added job runner info for short read tools in universe_wsgi.ini.sample.

2008-04-25 13:04:55 +00:00

maf_to_bed.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

maf_to_fasta_concat.py

Misc tool cleanup: eliminated all references to python2.3 / python2.4, imported galaxy eggs in several missed tools. Commented Pattern Matching tool section from tool_conf.xml.sample since tool is not functional. Added job runner info for short read tools in universe_wsgi.ini.sample.

2008-04-25 13:04:55 +00:00

maf_to_fasta_multiple_sets.py

Misc tool cleanup: eliminated all references to python2.3 / python2.4, imported galaxy eggs in several missed tools. Commented Pattern Matching tool section from tool_conf.xml.sample since tool is not functional. Added job runner info for short read tools in universe_wsgi.ini.sample.

2008-04-25 13:04:55 +00:00

maf_to_fasta.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00