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37 lines
1.3 KiB
XML
37 lines
1.3 KiB
XML
<tool id="maf_limit_size1" name="Filter MAF blocks" version="1.0.1">
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<description>by Size</description>
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<command interpreter="python">maf_limit_size.py $input1 $out_file1 $min_size $max_size</command>
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<inputs>
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<page>
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<param format="maf" name="input1" label="MAF File" type="data"/>
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<param name="min_size" label="Minimum Size" value="0" type="integer"/>
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<param name="max_size" label="Maximum Size" value="0" type="integer" help="A maximum size less than 1 indicates no limit"/>
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</page>
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</inputs>
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<outputs>
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<data format="maf" name="out_file1" />
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</outputs>
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<tests>
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<test>
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<param name="input1" value="3.maf" ftype="maf" />
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<param name="min_size" value="0"/>
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<param name="max_size" value="0"/>
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<output name="out_file1" file="maf_limit_size1_out.maf" />
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</test>
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</tests>
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<help>
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**What it does**
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This tool takes a MAF file and a size range and extracts the MAF blocks which fall within the specified range.
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------
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**Citation**
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If you use this tool, please cite `Blankenberg D, Taylor J, Nekrutenko A; The Galaxy Team. Making whole genome multiple alignments usable for biologists. Bioinformatics. 2011 Sep 1;27(17):2426-2428. <http://www.ncbi.nlm.nih.gov/pubmed/21775304>`_
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</help>
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</tool>
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