Dannon Baker 34f99283a8 Merged in jmchilton/galaxy-central-fork-1 (pull request #259) ...

FASTQ Optimizations (Round 1 - Filtering)

2013-12-17 10:42:49 -05:00

..

fastq_combiner.py

Change color space FASTA file type from fastqsolid to fastqcssanger.

2010-03-02 10:47:23 -05:00

fastq_combiner.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

fastq_filter.py

FASTQ Opt: Disable formatting output, reading is already enforcing it?

2013-11-12 22:02:58 -06:00

fastq_filter.xml

FASTQ Opt: Restructure fastq_filter to only call execfile once and reuse the same function.

2013-11-12 22:02:58 -06:00

fastq_groomer.py

Allow FASTQ Groomer tool to work on Color Space files that contain a fake/dummy quality score for the adapter base (e.g. files obtained from the SRA). The Groomer will remove the dummy/fake quality score from the read.

2011-08-22 16:07:23 -04:00

fastq_groomer.xml

Some minor select field changes including Illumina 1.8+

2013-12-17 08:49:21 +00:00

fastq_manipulation.py

Add a new FASTQ tool suite. Four FASTQ variants are supported: sanger, illumina, solexa and solid.

2010-02-23 16:48:07 -05:00

fastq_manipulation.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

fastq_masker_by_quality.py

Minor cleanup for ensembl display applications and fastq masker tool.

2010-05-24 15:05:55 -04:00

fastq_masker_by_quality.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

fastq_paired_end_deinterlacer.py

FASTQ de-interlacer - fix for memory leak

2011-10-24 15:02:07 -05:00

fastq_paired_end_deinterlacer.xml

Updated tool wrapper version number

2011-05-17 17:54:04 +10:00

fastq_paired_end_interlacer.py

Interlacer and de-interlacer now keep track or single reads (that have no mate)

2011-05-17 17:26:04 +10:00

fastq_paired_end_interlacer.xml

Typo

2011-06-10 13:15:17 -04:00

fastq_paired_end_joiner.py

Add a new FASTQ tool suite. Four FASTQ variants are supported: sanger, illumina, solexa and solid.

2010-02-23 16:48:07 -05:00

fastq_paired_end_joiner.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

fastq_paired_end_splitter.py

Add a new FASTQ tool suite. Four FASTQ variants are supported: sanger, illumina, solexa and solid.

2010-02-23 16:48:07 -05:00

fastq_paired_end_splitter.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

fastq_stats.py

Add a new FASTQ tool suite. Four FASTQ variants are supported: sanger, illumina, solexa and solid.

2010-02-23 16:48:07 -05:00

fastq_stats.xml

tool tip fix for fastq summary and sorter

2013-03-19 11:50:03 -04:00

fastq_to_fasta.py

Move FASTA classes in galaxy_utils from fastq.py to fasta.py.

2010-02-24 11:57:35 -05:00

fastq_to_fasta.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

fastq_to_tabular.py

Extend fastq_to_tabular converter to offer more than 2 column output

2010-11-10 16:26:35 +00:00

fastq_to_tabular.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

fastq_trimmer_by_quality.py

Add additional tests to FASTQ Quality Trimmer tool

2010-04-09 11:35:02 -04:00

fastq_trimmer_by_quality.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

fastq_trimmer.py

Add a new FASTQ tool suite. Four FASTQ variants are supported: sanger, illumina, solexa and solid.

2010-02-23 16:48:07 -05:00

fastq_trimmer.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

tabular_to_fastq.py

Add FASTQ <--> Tabular converter tools.

2010-03-24 15:13:57 -04:00

tabular_to_fastq.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00