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38 lines
2.3 KiB
Plaintext
38 lines
2.3 KiB
Plaintext
#This is a sample file distributed with Galaxy that enables tools
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#to use a directory of FileBinnedArray data files. You will need
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#to create these data files and then create a binned_scores.loc file
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#similar to this one (store it in this directory ) that points to
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#the directories in which those files are stored. The binned_scores.loc
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#file has this format (white space characters are TAB characters):
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#
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#<build> <description> <dir>
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#
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#So, for example, if you had hg16 ENCODE binCons on MLAGAN alignments
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#stored in /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan,
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#then the binned_scores.loc entry would look like this:
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#
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#hg16 ENCODE binCons on MLAGAN alignments /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan
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#
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#and your /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan
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#directory would contain all of your "binned" files (e.g.):
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#
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#-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 ENm001
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#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 ENm002
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#-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 ENm003
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#...etc...
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#
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#Your binned_scores.loc file should include an entry per line for each
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#"binned" file you have stored. For example:
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#
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#hg16 ENCODE binCons on MLAGAN alignments /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan
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#hg16 ENCODE binCons on TBA alignments /depot/data2/galaxy/binned_scores/hg16/encode_bincons_tba
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#hg16 ENCODE GERP on MLAGAN alignment /depot/data2/galaxy/binned_scores/hg16/encode_gerp_lagan
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#hg16 ENCODE GERP on TBA alignment /depot/data2/galaxy/binned_scores/hg16/encode_gerp_tba
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#hg16 ENCODE phastCons on MLAGAN alignment /depot/data2/galaxy/binned_scores/hg16/encode_phastcons_lagan
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#hg16 ENCODE phastCons on TBA alignment /depot/data2/galaxy/binned_scores/hg16/encode_phatcons_tba
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#hg17 ENCODE phastCons on TBA alignment /depot/data2/galaxy/binned_scores/hg17/phastcons_encode_sep2005_tba
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#hg17 phastCons on 8-species multiz, 16-Jun-2005 /depot/data2/galaxy/binned_scores/hg17/phastcons_mzPt1Mm5Rn3Cf1Gg2Fr1Dr1/
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#hg17 phastCons on 17-species multiz, 13-Apr-2006 /depot/data2/galaxy/binned_scores/hg17/phastCons17way/ba
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#hg17 ESPERR Regulatory Potential, 7-species, 23-Jun-2006 /depot/data2/galaxy/binned_scores/hg17/esperr_rp_7way/ba
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#hg18 phastCons on 17-species multiz, 06-Apr-2006 /depot/data2/galaxy/binned_scores/hg18/phastCons17way/ba
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