Kelly Vincent dbfa0a7cca Updated builds.txt (and manual_builds.txt) to newest version, corresponding to that on main. Includes hg19 and phiX correction.

2010-05-06 12:11:47 -04:00

..

shared

Updated builds.txt (and manual_builds.txt) to newest version, corresponding to that on main. Includes hg19 and phiX correction.

2010-05-06 12:11:47 -04:00

add_scores.loc.sample

Add the add_scores tool.

2010-03-23 15:43:58 -04:00

alignseq.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

annotation_profiler_options.xml.sample

Updates for 'Profile Annotations for a set of genomic intervals' tool. This tool will now report a 'data version'. Add a script that creates the indexes and table description xml from a UCSC database dump.

2010-04-23 11:14:26 -04:00

annotation_profiler_valid_builds.txt.sample

Adding a new parameter type drill_down. This parameter type creates a hierarchical set of checkboxes or radiobuttons.

2008-05-07 17:10:35 +00:00

binned_scores.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

blastdb.loc.sample

Updated megablast_wrapper tool to allow for date to be included with database name and displayed (so user knows how current it is)

2009-12-09 18:50:12 -05:00

bowtie_indices_color.loc.sample

Added SOLiD (colorspace) support to Bowtie wrapper tool

2010-01-11 17:04:45 -05:00

bowtie_indices.loc.sample

Updated several sample index loc files to make it clearer how the actual loc files should appear

2009-10-07 15:31:18 -04:00

bwa_index.loc.sample

Removed SOLiD option from BWA, cleaned up Bowtie and BWA wrapper interfaces, and changed name of BWA index loc file

2010-01-22 10:49:38 -05:00

codingSnps.loc.sample

Add the codingSnps tool.

2010-03-23 13:53:21 -04:00

encode_datasets.loc.sample

Commenting data lines in .loc.sample tool-data files so tools will not throw exceptions.

2008-04-03 14:31:16 +00:00

faseq.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

fastx_clipper_sequences.txt

Updating FASTX tool-set to the latest version v0.0.10

2009-09-14 17:03:17 -04:00

lastz_seqs.loc.sample

Fixes for lastz_wrapper that includes job splitting, more functional tests, removed incorrectly committed .loc file and committed the .loc.sample file.

2009-12-01 20:16:41 -05:00

liftOver.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

maf_index.loc.sample

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

maf_pairwise.loc.sample

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

microbial_data.loc.sample

Commenting data lines in .loc.sample tool-data files so tools will not throw exceptions.

2008-04-03 14:31:16 +00:00

perm_base_index.loc.sample

First pass as PerM. Also made cosmetic changes to BWA.

2010-03-17 16:40:36 -04:00

perm_color_index.loc.sample

First pass as PerM. Also made cosmetic changes to BWA.

2010-03-17 16:40:36 -04:00

phastOdds.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

quality_scores.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

regions.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

sam_fa_indices.loc.sample

Updated several sample index loc files to make it clearer how the actual loc files should appear

2009-10-07 15:31:18 -04:00

sequence_index_base.loc.sample

Updated several sample index loc files to make it clearer how the actual loc files should appear

2009-10-07 15:31:18 -04:00

sequence_index_color.loc.sample

Updated several sample index loc files to make it clearer how the actual loc files should appear

2009-10-07 15:31:18 -04:00

twobit.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00