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41 lines
1.4 KiB
XML
41 lines
1.4 KiB
XML
<tool id="mutation_visualize" name="Mutation Visualization" version="1.0.0">
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<description></description>
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<command interpreter="python">visualize.py --input-file=$input --output-file=$out_file1 --zoom=$zoom_value $header_row</command>
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<inputs>
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<param format="tabular" name="input" type="data" label="Compare sequences in"></param>
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<param name="header_row" type="boolean" label="Header in dataset?" checked="yes" truevalue="" falsevalue="--noheaders"/>
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<param name="zoom_value" type="select" label="Zoom">
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<option value="1">1x</option>
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<option value="2">2x</option>
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<option value="3">3x</option>
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<option value="4">4x</option>
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<option value="5">5x</option>
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</param>
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</inputs>
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<outputs>
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<data format="svg" name="out_file1" />
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</outputs>
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<help>
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.. class:: warningmark
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The SVG image produced by this tool may not display correctly in Mozilla Firefox. It works fine in Chrome and Safari.
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-----
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**Example**
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Given the input file::
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gm blood gm cheek
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chrM 72 73 G 26394 4 49 0 26447 26398 1 23389 3 45 0 23437 23392 1
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chrM 149 150 T 11 50422 2 96 50531 50435 1 4 45417 1 65 45487 45422 1
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Visualization:
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.. image:: ../static/images/mutation_visualization_example.png
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:width: 150
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</help>
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</tool>
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