John Chilton 8e9d6e685e Merge pull request #9354 from mvdbeek/parent_instance_detached_again_3 ...

[19.09] Expunge tool shed repository objects, prevents ParentInstanceDetachedError

2020-02-18 08:54:04 -05:00

..

authnz

Removed raw_token column, bumped migration number

2019-04-04 10:31:43 -04:00

config

[19.09] Fix config validation for changes in 19.09.

2019-09-11 15:52:03 -04:00

dataset_collections

Make galaxy.model.dataset_collections more usable outside manager context.

2019-03-25 16:50:40 -04:00

datatypes

Datatype-based validation framework.

2019-08-22 15:45:25 -04:00

jobs

Add bigmem to sample job_confs for correctness.

2019-09-25 15:19:09 -04:00

managers

Remove duplicate logic for 'is_admin' checks

2019-08-29 17:05:23 -04:00

queue_worker

Fallback for python2 not having math.inf

2019-10-26 18:42:45 +02:00

shed_unit

Add basic unit test for install repository manager

2019-10-25 14:15:49 +02:00

tool_util

Fix mulled version comparison

2019-12-08 12:26:04 +01:00

tools

Give ToolShedRepositoryCache.rebuild its own session

2020-02-11 14:57:24 +01:00

unittest_utils

Move logic of whether to load a config into can_load_config_file and fix unit tests

2020-02-12 11:53:28 +01:00

util

Refactor reading config properties from a file

2019-08-14 19:11:04 -04:00

visualizations

Do not encode a rendered Mako template

2018-07-01 00:19:00 -07:00

web

Work around re._pattern_type rename in python 3.7

2019-10-22 23:15:27 +02:00

workflows

Implement yet another syntax for Galaxy Markdown.

2019-08-30 09:46:14 -04:00

__init__.py

Fix import order for cron/, scripts/ and test/

2017-09-25 23:44:39 +01:00

test_auth.py

Update test_auth.py

2019-07-08 17:52:36 +02:00

test_compression_util.py

Use more elegant way to test stream type

2019-07-21 10:59:09 +02:00

test_containers.py

linting

2019-07-08 13:07:56 +02:00

test_fix_type_error.py

Use getfullargspec on python3

2019-04-29 11:52:33 +02:00

test_galaxy_mapping.py

Track workflow step input definitions in our model.

2018-11-15 21:34:02 +01:00

test_galaxy_transactions.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

test_id_encode_decode.py

Refactor galaxy.web.security into galaxy.security.idencoding.

2019-03-19 14:28:31 -04:00

test_lazy_process.py

[16.01] More robust test_lazy_process.

2016-03-29 12:24:51 -04:00

test_markdown_validate.py

Allow spaces in input/output labels.

2019-10-03 16:09:13 -04:00

test_model_copy.py

Implement simple history copy unit tests.

2018-07-24 13:09:06 -04:00

test_model_discovery.py

Add HDCA support to model persistence script.

2019-04-17 08:51:18 -04:00

test_model_store.py

Explicitly create extra_files_path when discovering outputs with extra files

2019-05-27 14:37:53 +02:00

test_objectstore.py

Script to populate datasets/libraries directly into an objectstore and model store.

2019-04-10 11:01:09 -04:00

test_remote_shell.py

Share ssh key generation across tests

2018-10-14 18:08:17 +02:00

test_routes.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

test_rule_utils.py

Fix empty handling rule.

2018-07-26 09:52:07 -04:00

test_security_passwords.py

More password encoding handling fixes.

2018-05-23 13:01:05 -04:00

test_sockets.py

Fix I201 errors from flake8-import-order

2016-11-23 18:31:04 +00:00

test_sqlite_utils.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

test_topsort.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

test_verify.py

Move tools/verify/ into tool_util/verify/

2019-07-12 18:06:53 +01:00

tools_support.py

Create galaxy-tool-util package.

2019-05-16 16:45:25 -04:00