galaxy

admin

Request type now requires at least one sample state

2011-01-28 10:24:55 -05:00

common

Workflow/History targets for individual samples.

2011-01-17 14:58:02 -05:00

dataset

Copy datasets feature:

2011-02-22 17:14:16 -05:00

external_services

Bug fix for diplaying menu item for manully selecting sample datasets for transfer.

2011-01-21 11:55:06 -05:00

genetrack

Added the missing "invalid.html" for GeneTrack.

2009-01-29 11:11:15 -05:00

history

Use jStorage (http://www.jstorage.info/) instead of jStore. Tested to be working on IE7 and IE8, where the latter was failing. Fixes links not showing up in history pane to expand histories.

2011-02-18 15:06:34 -05:00

library

(no commit message)

2011-02-22 10:38:35 -05:00

mobile

Abstract the code supporting data library templates so templates can be used in sample tracking as well. These templates now provide support for handling information about sample runs. A RequestType can have a single association to a Run, with the run details template made available to all samples. A Sample can have many associations to Runs.

2010-12-09 14:52:27 -05:00

page

Use jStorage (http://www.jstorage.info/) instead of jStore. Tested to be working on IE7 and IE8, where the latter was failing. Fixes links not showing up in history pane to expand histories.

2011-02-18 15:06:34 -05:00

requests

Bug fix: do not show sample field widgets in the view request page

2011-02-25 16:12:17 -05:00

root

Fix IE error when clicking on links in tool pane. Small refactoring as well

2011-02-22 17:24:10 -05:00

tracks

trackster: color picker for color track config params

2011-02-06 02:20:31 -05:00

user

Bug fixes for missing scrollbars on OpenID pages.

2011-02-15 14:14:03 -05:00

visualization

trackster: Fix shared visualizations

2010-12-10 17:42:08 -05:00

webapps

Add 2 new sample tracking reports and 2 new workflow reports, each of which provides the total number of items per month and the total number of items per user ( per month ). Clean up the styles in the admin menu and reports menu mako templates. Clarify in the reports config that reports do not support sqlite. Render the samples checkbox ( when editing samples ) at the top of the table cell.

2011-02-14 14:54:07 -05:00

workflow

workflows: Will never collapse steps containing workflow parameters by default now.

2011-02-24 18:21:46 -05:00

base_panels.mako

Display the average rating for each tool the tool grid in the Galaxy Tool Shed. Add a common method for rendering the star rating, and clean up template code by using this new common method.

2010-08-30 12:54:58 -04:00

base.mako

Add 'metas()' %def to base.mako, to allow subclassing templates to declare additional <meta/> tags.

2010-03-12 12:03:25 -05:00

community_rating.mako

Add CommunityRatingColumn to grid infrastructure and add 'Community Rating' columns to published item grids. Community ratings are computed on demand for now, but this may need to change in the future.

2010-09-08 11:43:25 -04:00

display_base.mako

Use jStorage (http://www.jstorage.info/) instead of jStore. Tested to be working on IE7 and IE8, where the latter was failing. Fixes links not showing up in history pane to expand histories.

2011-02-18 15:06:34 -05:00

display_common.mako

First pass of the new sequencer_type & sequencer framework

2010-12-20 10:50:50 -05:00

embed_base.mako

Fixes to item embedding in pages. In particular, fixed the editor color changes that were occurring when moving the cursor through embedded items.

2010-03-16 12:00:10 -04:00

export_base.mako

Make it easier to move workflows directly from one Galaxy instance to another. Workflow download/export page now provides URL that can be used to directly import a workflow from one instance to another.

2010-11-29 14:16:49 -06:00

form.mako

Add history import and export functionality to Galaxy. Options for exporting the current history to a file or importing a history from a file are now listed in the history options menu. Also modified the form builder to support file inputs.

2010-06-03 12:17:34 -04:00

grid_base_async.mako

Improve display of page numbers on grids so that not all page numbers are always shown. Add parameter 'num_page_links' to grid framework so that grid can control how many page links are shown.

2011-01-10 15:14:16 -05:00

grid_base.mako

Trackster history dataset selection: show history name, show and order by hid in display.

2011-02-04 14:49:23 -05:00

grid_common.mako

Modest improvements in grid search UI: (a) size of search box increases to show help text (column label); (b) help text is highlighted rather than hidden when user clicks on search box; (c) standard and advanced search divs are toggled correctly when moving between searches.

2011-01-28 13:12:02 -05:00

ind_share_base.mako

Enhancements and fixes for sharing framework: (a) sharing/publishing webpages can now be displayed in frames; (b) sharing webpages can display messages; (c) workflow sharing highlights correct tab; (d) history sharing for individual users now uses sharing framework; (e) item sharing with individual users now uses common template.

2010-08-16 17:05:59 -04:00

message.mako

Fix form.mako and message.mako to use the correct webapp version of base_panels.mako.

2010-05-28 09:51:57 -04:00

no_access.mako

You can now require that users log in to use Galaxy. The sample config is way different but it's only because I cleaned it up a bit. The only new options are require_login/allow_user_creation.

2008-11-20 15:14:47 -05:00

panels.mako

Decouple the masthead from base_panels.mako.

2010-03-31 13:11:05 -04:00

sharing_base.mako

Make published items set the "Shared Data" tab as the active tab

2010-10-07 15:33:54 -04:00

show_params.mako

New 'view details' icon in history pane that when moused over, shows the details of the HDA (created time, filesize, parameters, etc)

2011-01-26 11:06:47 -05:00

tagging_common.mako

- Refactored tagging/autocomplete JS, fixing bugs regarding leaving the tagging box

2010-09-17 17:51:11 -04:00

tool_executed.mako

Typos 'succesfully' -> 'successfully' fixed in tool_executed.mako

2010-09-15 17:11:10 -04:00

tool_form.mako

Refactor javascript in tool_form.mako; fix indentation for repeat groups

2011-02-22 18:49:57 -05:00