Kelly Vincent 7403f4301b Updated Bowtie wrapper for new fastqcssanger datatype, and added equCab2 to builds.txt so sam_to_bam and sam_pileup will pass

2010-03-03 15:37:43 -05:00

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bowtie_color_wrapper.xml

Updated Bowtie wrapper for new fastqcssanger datatype, and added equCab2 to builds.txt so sam_to_bam and sam_pileup will pass

2010-03-03 15:37:43 -05:00

bowtie_wrapper_code.py

Changed the bowtie wrapper tool into two different tools: one for illumina data and one for solid

2010-01-12 16:49:02 -05:00

bowtie_wrapper.py

Removed SOLiD option from BWA, cleaned up Bowtie and BWA wrapper interfaces, and changed name of BWA index loc file

2010-01-22 10:49:38 -05:00

bowtie_wrapper.xml

Updated Bowtie test files to handle new version (0.12.3) of Bowtie (bowtie_color_wrapper will fail until new version installed). Updated samtools tools test files. Removed version references from Bowtie and BWA tools.

2010-02-24 07:11:43 -05:00

bwa_wrapper_code.py

Corrected problem with assignment of dbkey to output from BWA and Bowtie tools

2009-10-02 10:49:09 -04:00

bwa_wrapper.py

Updated BWA wrapper, SAM to BAM, SAM Merge, and SAM Pileup so that the return code of the program is captured and if it fails, the stderr is printed; temp files are created locally; a message is printed if results file empty.

2010-02-23 10:40:19 -05:00

bwa_wrapper.xml

Updated Bowtie test files to handle new version (0.12.3) of Bowtie (bowtie_color_wrapper will fail until new version installed). Updated samtools tools test files. Removed version references from Bowtie and BWA tools.

2010-02-24 07:11:43 -05:00

fastq_statistics.xml

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

lastz_paired_reads_wrapper.py

Error conditions will skip lines instead of stopping the tool for the lastz paired reads, and clean up the tool pages for both lastz tools.

2010-03-03 13:40:26 -05:00

lastz_paired_reads_wrapper.xml

Error conditions will skip lines instead of stopping the tool for the lastz paired reads, and clean up the tool pages for both lastz tools.

2010-03-03 13:40:26 -05:00

lastz_wrapper.py

Enhance lastz tool, enhance functional test framework, and fix a bug in editing permissions on a folder:

2010-01-11 13:26:00 -05:00

lastz_wrapper.xml

Error conditions will skip lines instead of stopping the tool for the lastz paired reads, and clean up the tool pages for both lastz tools.

2010-03-03 13:40:26 -05:00