Guruprasad Anada 45cffbb8ed Added a new tool set for performing multivariate statistical analyses

2010-03-04 11:48:10 -05:00

..

annotation_profiler

Fix locations of cached data for tests

2010-02-25 12:27:07 -05:00

data_destination

merging from central

2008-10-28 11:28:15 -04:00

data_source

Update tool_conf.xml.main and the tool conf for eupathdb.

2010-01-27 08:51:23 -05:00

emboss_5

Enhance tool parameter sanitization. Sanitization rules can now be defined on a per input parameter basis. Resolves ticket #38 and #142.

2009-12-07 10:19:41 -05:00

encode

Fix gencode partition tool to not use hard-coded paths.

2009-12-09 15:21:41 -05:00

evolution

Changing an 'and' to 'or' in SNP mutate codon tool error checking.

2009-09-22 11:40:41 -04:00

extract

Fix locations of cached data for tests

2010-02-25 12:27:07 -05:00

fasta_tools

Fix fast_compute_length performance by using version contributed by Bjoern Gruning, and fix email configuration bug in the user controller which was found by Ed Kirton.

2010-01-25 10:01:04 -05:00

fastq

Update tool_conf.xml.main to use the new FASTQ tools. Minor updates to help text for a few of the FASTQ tools.

2010-03-03 15:18:09 -05:00

fastx_toolkit

Fix accidentally committed fastx tool configs

2010-01-07 16:20:04 -05:00

filters

Fix locations of cached data for tests

2010-02-25 12:27:07 -05:00

genetrack

Create NGS peak calling section. Add MACS peak caller. Move GeneTrack to new section. Increment sam2interval tool version.

2010-02-05 16:06:27 -05:00

hyphy

Added functional test for hyphy NJ tree builder.

2010-02-04 11:56:58 -05:00

maf

Better approach to altering initial content of output dataset if necessary. The upload tool will now call the data type's groom_output_dataset() method ( a better name than before_setting_metadata since it is not related to metadata ). This will now also run on the cluster.

2009-12-08 11:46:13 -05:00

metag_tools

Fix locations of cached data for tests

2010-02-25 12:27:07 -05:00

multivariate_stats

Added a new tool set for performing multivariate statistical analyses

2010-03-04 11:48:10 -05:00

new_operations

Enhance functional test framework so that a boolean form field ( checkbox ) can have a false value ( be unchecked ). Add a 2nd test to gops_concat that uses this behavior.

2010-02-17 11:07:08 -05:00

next_gen_conversion

Fixed my previous fix for copying history items to a library, which really didn't fix anything.  Fixed the functional tests for lav_to_bed, split_paired_reads, and solid2fastq by adding the 2nd output dataset to the test for each tool.  Renamed the test files for the tools to have the Galaxy supported file extension.

2010-01-14 09:44:58 -05:00

peak_calling

Add a label for experiment name in MACs

2010-02-05 16:27:18 -05:00

plotting

Add gnuplot requirement tag to boxplot tool.

2010-02-23 19:54:54 -05:00

regVariation

Added a new tool set for performing multivariate statistical analyses

2010-03-04 11:48:10 -05:00

samtools

Modifications to pileup_parser

2010-03-02 16:35:21 -05:00

solid_tools

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

sr_mapping

Updated Bowtie wrapper for new fastqcssanger datatype, and added equCab2 to builds.txt so sam_to_bam and sam_pileup will pass

2010-03-03 15:37:43 -05:00

stats

Fix locations of cached data for tests

2010-02-25 12:27:07 -05:00

taxonomy

Bug fixes to LCA tool

2010-02-22 16:22:12 -05:00

validation

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

visualization

Create NGS peak calling section. Add MACS peak caller. Move GeneTrack to new section. Increment sam2interval tool version.

2010-02-05 16:06:27 -05:00