galaxy

chained_dyndest_rules

fix chained dynamic destinations integration test

2021-02-25 13:49:19 +01:00

cloudauthz

Minor test cleanup

2020-09-18 12:28:33 +02:00

delay_rules

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mock_biotools_content/data

Parse edam operation and topic data from bio.tools if available.

2021-09-07 14:29:38 -04:00

objectstore

Fix mypy tests that broke while merging forward

2021-11-01 18:46:05 +01:00

objectstore_selection_rules

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panel_views_1

Allow static panel views without explicit "items" - just start with integrated panel and apply filters.

2021-09-15 10:50:57 -04:00

resubmission_rules

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webdav

Pluggable URI handling across upload components.

2020-07-14 10:09:50 -04:00

__init__.py

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chained_dyndest_job_conf.xml

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conftest.py

Shut down driver instance after collection

2021-10-19 13:27:15 +02:00

delay_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

dockerized_job_conf.yml

Support setting per-job-environment container resolvers using the container_resolvers key in the environment config.

2021-08-17 10:28:51 -04:00

embedded_pulsar_docker_job_conf.yml

Use remote_metadata: true when using extended metadata

2021-10-26 17:59:05 +02:00

embedded_pulsar_job_conf.xml

Use remote_metadata: true when using extended metadata

2021-10-26 17:59:05 +02:00

embedded_pulsar_metadata_extended_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

embedded_pulsar_metadata_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

embedded_pulsar_singularity_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

file_sources_conf.yml

Pluggable URI handling across upload components.

2020-07-14 10:09:50 -04:00

handler_template_job_conf.xml

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io_injection_job_conf.yml

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refgenie.yml

add more tests

2021-03-25 14:01:17 +01:00

resubmission_default_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

resubmission_dynamic_job_conf.xml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

resubmission_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

resubmission_job_resource_parameters_conf.xml

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resubmission_pulsar_job_conf.xml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

resubmission_runners.py

mypy for test/

2020-12-25 17:38:51 -05:00

resubmission_small_memory_job_conf.xml

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resubmission_small_memory_resubmission_to_large_job_conf.xml

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resubmission_tool_detected_always_error_job_conf.xml

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resubmission_tool_detected_resubmit_job_conf.xml

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sets_tmp_dir_expression_job_conf.xml

Fix another integration test

2021-02-25 13:49:58 +01:00

sets_tmp_dir_to_true_job_conf.xml

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simple_job_conf.xml

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singularity_job_conf.yml

Support setting per-job-environment container resolvers using the container_resolvers key in the environment config.

2021-08-17 10:28:51 -04:00

test_celery_tasks.py

Allow passing Pydantic models as arguments to Celery tasks.

2021-10-13 22:32:36 -04:00

test_chained_dynamic_destinations.py

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test_change_datatype_with_store_by_id.py

Move test_assign_column_pja to own class

2020-08-11 14:53:53 +02:00

test_cli_runners.py

Move ssh_util from galaxy_test.base to galaxy.security

2021-11-09 14:37:48 +01:00

test_config_defaults.py

Merge branch 'release_21.09' into dev

2021-10-28 11:40:04 +02:00

test_config_options_users.py

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test_config_schema.py

Move schema loading/validating code out of config

2020-03-02 15:55:29 -05:00

test_configuration_decode.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

test_containerized_jobs.py

Support setting per-job-environment container resolvers using the container_resolvers key in the environment config.

2021-08-17 10:28:51 -04:00

test_data_manager_refgenie.py

lint

2021-03-25 14:08:14 +01:00

test_data_manager.py

Add Integration test for failing data manager jobs when dbkey already exists

2021-09-20 13:07:23 +02:00

test_datatype_upload.py

Rev mypy.

2021-04-23 14:49:53 -04:00

test_default_permissions.py

Test cases and fix for config option new_user_dataset_access_role_default_private.

2020-12-01 09:05:57 -05:00

test_dynamic_edam_loading.py

Parse edam operation and topic data from bio.tools if available.

2021-09-07 14:29:38 -04:00

test_edam_toolbox.py

Implement tool panel views - config, toolbox, search, client.

2021-08-11 10:14:43 -04:00

test_extended_metadata_mapping.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

test_extended_metadata_outputs_to_working_directory.py

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test_extended_metadata.py

Tighten test

2021-10-23 21:32:18 +02:00

test_fail_job_tool_unavailable.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

test_fluent_metrics.py

Replace API test with integration test

2021-03-10 12:54:41 +01:00

test_flush_per_n_datasets.py

Add test for paired discovery and fix paired discovery

2021-03-23 10:29:34 +01:00

test_galaxy_interactor.py

Merge API GalaxyInteractorTestCase into integration test

2021-09-23 19:05:30 +02:00

test_genomes.py

Add tests for sequences and indexes endpoints

2021-02-10 15:55:21 -05:00

test_handler_assignment_methods.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

test_history_import_export.py

Type fixes: integration_setup.py

2021-10-11 16:32:29 -04:00

test_interactivetools_api.py

Use f-strings in forward-merged code

2021-05-11 18:09:53 +02:00

test_job_environments.py

Fix isolated job home dir on pulsar

2021-05-21 21:01:58 +02:00

test_job_outputs_to_working_directory.py

Update test class docstring

2021-01-07 17:53:29 +01:00

test_job_recovery.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

test_job_resubmission.py

fix mutable arguments in tests

2021-01-02 18:48:31 +00:00

test_kubernetes_runner.py

Rev mypy.

2021-04-23 14:49:53 -04:00

test_kubernetes_staging.py

Run kubernetes staging test against uvicorn

2021-04-13 10:13:42 +02:00

test_local_job_cancellation.py

Fix remaining issues reported by bugbear; add it to flake8 reqs

2021-01-16 05:58:15 +00:00

test_mules_as_job_handlers.py

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test_page_revision_json_encoding.py

Fix pages integration test

2021-02-11 16:01:34 +01:00

test_panel_views.py

Allow static panel views without explicit "items" - just start with integrated panel and apply filters.

2021-09-15 10:50:57 -04:00

test_pulsar_embedded_containers.py

try something else

2021-03-31 13:42:17 +02:00

test_pulsar_embedded_copy_working.py

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test_pulsar_embedded_extended_metadata.py

Fix from work dir glob with extended metadata

2021-10-31 13:06:41 +01:00

test_pulsar_embedded_mq.py

Use remote_metadata in pulsar_embedded_mq test

2021-10-26 17:59:07 +02:00

test_pulsar_embedded_remote_metadata.py

Separate tests for "remote" and "remote + extended" metadata.

2021-04-14 13:21:15 -04:00

test_pulsar_embedded.py

Fix Pulsar's ability to read tool provided metadata when path is overridden.

2021-07-21 15:21:26 -04:00

test_quota.py

Adapt quotas tests to use JSON payload

2021-09-08 18:34:37 +02:00

test_remote_files_histories.py

Allow history export to galaxy.files plugins.

2020-12-26 08:36:48 -05:00

test_remote_files_posix.py

Type fixes: integration_setup.py

2021-10-11 16:32:29 -04:00

test_remote_files.py

Typing fixes for integration tests around galaxy.files stuff.

2021-10-11 16:32:30 -04:00

test_repository_operations.py

Merge branch 'release_21.01' into release_21.05

2021-07-30 16:34:18 +02:00

test_resolvers.py

Make conda test methods self-contained

2021-10-18 08:50:13 +02:00

test_save_job_id_on_datasets.py

Make sure test driver shuts down on failure

2021-10-26 17:59:04 +02:00

test_scripts.py

New pyupgrade fixes

2021-10-24 12:10:34 +01:00

test_shed_tool_tests.py

Need to call configure_shed for persistent shed_tool_conf

2020-05-31 19:25:42 +02:00

test_tool_data_delete.py

New pyupgrade fixes

2021-10-24 12:10:34 +01:00

test_upload_configuration_options.py

Fix test_fetch_nested_elements_from test

2021-10-27 09:23:55 +02:00

test_web_framework_config.py

FastAPI/ASGI CORS handling.

2021-01-27 19:55:48 -05:00

test_webdav.py

More comments for rapid testing optional galaxy.files stuff.

2020-10-22 09:30:50 -04:00

test_work_queue_put_failure.py

Replace usage of mkstemp with NamedTemporaryFile

2020-12-07 22:31:53 +01:00

test_workflow_handler_configuration.py

Don't start workflow scheduler for handler in job pool

2021-06-15 18:23:49 +02:00

test_workflow_refactoring.py

Merge remote-tracking branch 'upstream/release_21.01' into dev

2021-03-01 16:52:02 -05:00

test_workflow_scheduling_options.py

New pyupgrade fixes

2021-10-24 12:10:34 +01:00

test_workflow_sync.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

tool_sheds_conf.xml

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uses_shed.py

typing fixes for integration testing framework stuff...

2021-10-14 00:51:59 -04:00

workflow_handler_configuration_job_conf.xml

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