mvdbeek 59d24e5e43 Add tool source storage admin and dev documentation ...

- doc/source/admin/tool_source_storage.rst: operator-facing guide
  covering backend choice, populate_store usage, watch mode, and the
  per-conf composite story.
- doc/source/dev/tool_source_storage.rst: developer-facing
  architecture overview of the store, LazyToolBox, and the batch
  endpoint integration.

2026-07-28 17:26:56 +02:00

..

special_topics

Merge branch 'release_26.1' into dev

2026-07-14 19:13:50 +02:00

_inc_proxy_prereq.md

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_inc_proxy_serving_root.md

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_inc_proxy_ssl.md

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ai_agents.md

Update admin docs and 26.0 release notes for the GalaxyAI rebrand

2026-05-20 11:35:01 -04:00

apache.md

docs: fix typos

2026-06-14 13:18:21 +00:00

authentication.md

docs: fix typos

2026-06-14 13:18:21 +00:00

carbon_emissions.md

docs: fix typos

2026-06-14 13:18:21 +00:00

cluster.md

docs: fix typos

2026-06-14 13:18:21 +00:00

conda_faq.rst

docs: fix typos

2026-06-14 13:18:21 +00:00

config_logging.rst

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config-template-secrets-create.png

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config-template-secrets-edit.png

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config.rst

docs: fix typos

2026-06-14 13:18:21 +00:00

container_resolvers.rst

Merge branch 'release_26.1' into dev

2026-06-20 22:49:25 +02:00

data_tables.md

docs: fix typos

2026-06-14 13:18:21 +00:00

data.md

Make file source form alerts template configurable

2026-07-13 16:02:14 +02:00

db_migration.md

docs: fix remaining typos

2026-06-14 13:18:29 +00:00

dependency_resolvers.rst

docs: fix typos

2026-06-14 13:18:21 +00:00

dropbox_callback.png

Allow oauth2 file sources with Dropbox initial implementation.

2024-10-14 15:16:41 +02:00

dropbox_client_creds.png

Allow oauth2 file sources with Dropbox initial implementation.

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dropbox_create_app_options_1.png

Allow oauth2 file sources with Dropbox initial implementation.

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dropbox_create_button.png

Allow oauth2 file sources with Dropbox initial implementation.

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dropbox_scopes.png

Allow oauth2 file sources with Dropbox initial implementation.

2024-10-14 15:16:41 +02:00

enable_headers_in_fetch_requests.md

Adds docs for enabling HTTP headers in fetch

2026-01-27 11:31:35 +01:00

file_source_azure_configuration_template.png

Allow oauth2 file sources with Dropbox initial implementation.

2024-10-14 15:16:41 +02:00

file_source_azure_configuration.png

Allow oauth2 file sources with Dropbox initial implementation.

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file_source_dropbox_configuration_template.png

Allow oauth2 file sources with Dropbox initial implementation.

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file_source_dropbox_configuration.png

Allow oauth2 file sources with Dropbox initial implementation.

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file_source_elabftw_configuration_template.png

Set writable: true in file source template for eLabFTW

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file_source_elabftw_configuration.png

Set writable: true in file source template for eLabFTW

2025-02-13 15:33:56 +01:00

file_source_ftp_configuration_template.png

Allow oauth2 file sources with Dropbox initial implementation.

2024-10-14 15:16:41 +02:00

file_source_ftp_configuration.png

Allow oauth2 file sources with Dropbox initial implementation.

2024-10-14 15:16:41 +02:00

file_source_invenio_configuration_template.png

Add InvenioRDM file source configuration documentation and templates

2025-02-17 13:44:19 +01:00

file_source_invenio_configuration.png

Add InvenioRDM file source configuration documentation and templates

2025-02-17 13:44:19 +01:00

file_source_posix_configuration_template.png

Allow oauth2 file sources with Dropbox initial implementation.

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file_source_posix_configuration.png

Allow oauth2 file sources with Dropbox initial implementation.

2024-10-14 15:16:41 +02:00

file_source_rspace_configuration_template.png

Implement file source to integrate Galaxy with RSpace

2025-05-09 12:04:46 +02:00

file_source_rspace_configuration.png

Implement file source to integrate Galaxy with RSpace

2025-05-09 12:04:46 +02:00

file_source_s3fs_configuration_template.png

Allow oauth2 file sources with Dropbox initial implementation.

2024-10-14 15:16:41 +02:00

file_source_s3fs_configuration.png

Allow oauth2 file sources with Dropbox initial implementation.

2024-10-14 15:16:41 +02:00

file_source_templates.png

Implement file source to integrate Galaxy with RSpace

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file_source_webdav_configuration_template.png

Allow oauth2 file sources with Dropbox initial implementation.

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file_source_webdav_configuration.png

Allow oauth2 file sources with Dropbox initial implementation.

2024-10-14 15:16:41 +02:00

file_source_zenodo_configuration_template.png

Add Zenodo file source template documentation

2025-02-19 10:36:33 +01:00

file_source_zenodo_configuration.png

Add Zenodo file source template documentation

2025-02-19 10:36:33 +01:00

framework_dependencies.rst

Replace poetry with uv

2024-10-31 10:22:52 +00:00

ga4gh.md

Add developer GA4GH WES API guide

2026-06-08 16:31:27 -04:00

galaxy_options.rst

Merge branch 'release_26.1' into dev

2026-07-18 11:53:54 +02:00

gen_diagrams.py

Use `os.path.join() or pathlib.Path` instead of f-strings for filesystem paths

2026-02-27 19:48:46 +00:00

index.rst

Add pluggable tool source store infrastructure

2026-07-13 10:26:57 +02:00

job_metrics.rst

Support setting and displaying timezone with the core metrics plugin

2025-05-06 11:45:51 -04:00

jobs.md

docs: fix typos

2026-06-14 13:18:21 +00:00

migrating_to_gunicorn.md

docs: fix typos

2026-06-14 13:18:21 +00:00

mq.md

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nginx.md

docs: fix typos

2026-06-14 13:18:21 +00:00

object_store_aws_s3_configuration_template.png

Allow oauth2 file sources with Dropbox initial implementation.

2024-10-14 15:16:41 +02:00

object_store_aws_s3_configuration.png

Allow oauth2 file sources with Dropbox initial implementation.

2024-10-14 15:16:41 +02:00

object_store_azure_configuration_template.png

Allow oauth2 file sources with Dropbox initial implementation.

2024-10-14 15:16:41 +02:00

object_store_azure_configuration.png

Allow oauth2 file sources with Dropbox initial implementation.

2024-10-14 15:16:41 +02:00

object_store_boto3_configuration_template.png

Allow oauth2 file sources with Dropbox initial implementation.

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object_store_boto3_configuration.png

Allow oauth2 file sources with Dropbox initial implementation.

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object_store_disk_configuration_template.png

Allow oauth2 file sources with Dropbox initial implementation.

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object_store_disk_configuration.png

Allow oauth2 file sources with Dropbox initial implementation.

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object_store_generic_s3_configuration_template.png

Allow oauth2 file sources with Dropbox initial implementation.

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object_store_generic_s3_configuration.png

Allow oauth2 file sources with Dropbox initial implementation.

2024-10-14 15:16:41 +02:00

object_store_templates.png

Allow oauth2 file sources with Dropbox initial implementation.

2024-10-14 15:16:41 +02:00

options.rst

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production.md

docs: fix typos

2026-06-14 13:18:21 +00:00

proxy_package_layout.rst

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python.md

docs: fix more typos

2026-06-14 13:18:21 +00:00

reports_options.rst

Update citation to 2026 paper in `config_schema.yml`

2026-07-03 12:30:14 +01:00

reports.rst

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s3_configuration_template.png

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s3_configuration.png

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scaling.md

docs: fix typos

2026-06-14 13:18:21 +00:00

search_for_new_screenshots.py

Implement file source to integrate Galaxy with RSpace

2025-05-09 12:04:46 +02:00

security.md

docs: fix typos

2026-06-14 13:18:21 +00:00

sse_updates.md

Emit SSE/queue metrics as gauges, sample SSE counts in web workers

2026-06-18 09:37:49 +02:00

tool_panel.rst

Merge branch 'release_26.0' into release_26.1

2026-07-06 15:49:42 +02:00

tool_source_storage.rst

Add tool source storage admin and dev documentation

2026-07-28 17:26:56 +02:00

useful_scripts.rst

docs: fix typos

2026-06-14 13:18:21 +00:00

user_defined_tools.md

docs: fix more typos

2026-06-14 13:18:21 +00:00

user_file_source_form_full_aws_public.png

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user_file_source_form_full_azure.png

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user_file_source_form_full_elabftw.png

Update eLabFTW file source template docs

2025-02-17 13:10:32 +01:00

user_file_source_form_full_ftp.png

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user_file_source_form_full_invenio.png

Add InvenioRDM file source configuration documentation and templates

2025-02-17 13:44:19 +01:00

user_file_source_form_full_rspace.png

Implement file source to integrate Galaxy with RSpace

2025-05-09 12:04:46 +02:00

user_file_source_form_full_webdav.png

Add images of the webdav conf and template and update file source templates image

2024-10-10 10:40:58 +00:00

user_file_source_form_full_zenodo.png

Add Zenodo file source template documentation

2025-02-19 10:36:33 +01:00

user_object_store_form_full_aws_s3.png

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user_object_store_form_full_azure.png

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user_object_store_form_full_gcp_s3_interop.png

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