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galaxy/scripts/migrate_tools/0003_tools.xml
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<?xml version="1.0"?>
<toolshed name="toolshed.g2.bx.psu.edu">
<repository name="freebayes" description="Galaxy Freebayes Bayesian genetic variant detector tool" changeset_revision="213a3d6b579a">
<tool id="freebayes" version="0.0.2 " file="variant_detection/freebayes.xml" />
</repository>
</toolshed>