Nicola Soranzo 21b44bf348 Fix all E201 and E202 style errors ...

using the following command:
```
autopep8 -i -r --exclude $(sed -e 's|^|./|' -e 's|/$||' .ci/flake8_blacklist.txt | paste -sd,) --select E201,E202 .
```

2017-08-17 11:35:39 +01:00

..

0002_tools.sh

The InstallManager is now a stand-alone appication that attempts to load the tool panel as closely as possible to the way it was loaded before tools were migrated from the Galaxy distribution to the tool shed.

2012-02-28 11:38:08 -05:00

0002_tools.xml

Situations where a migration warning would be incorrectly displayed, and tools with matching filenames would be removed from the tool_conf.xml after running a migration script.

2014-02-19 15:23:45 -05:00

0003_tools.sh

Migrate the freebayes tool out of the Galaxy code distribution.

2012-07-10 16:23:34 -04:00

0003_tools.xml

Situations where a migration warning would be incorrectly displayed, and tools with matching filenames would be removed from the tool_conf.xml after running a migration script.

2014-02-19 15:23:45 -05:00

0004_tools.sh

Migrate NCBI Blast+ (and blastxml) to the toolshed.

2012-08-17 11:35:31 -04:00

0004_tools.xml

Situations where a migration warning would be incorrectly displayed, and tools with matching filenames would be removed from the tool_conf.xml after running a migration script.

2014-02-19 15:23:45 -05:00

0005_tools.sh

Migrate BWA to the tool shed.

2012-09-28 15:35:44 -04:00

0005_tools.xml

Situations where a migration warning would be incorrectly displayed, and tools with matching filenames would be removed from the tool_conf.xml after running a migration script.

2014-02-19 15:23:45 -05:00

0006_tools.sh

Migrate Picard tools to the tool shed.

2012-10-24 11:09:20 -04:00

0006_tools.xml

Situations where a migration warning would be incorrectly displayed, and tools with matching filenames would be removed from the tool_conf.xml after running a migration script.

2014-02-19 15:23:45 -05:00

0007_tools.sh

Migrated lastz and bowtie tools to the tool shed. Added a target_file feature to the tool dependency installation process.

2012-11-26 10:18:47 -05:00

0007_tools.xml

Situations where a migration warning would be incorrectly displayed, and tools with matching filenames would be removed from the tool_conf.xml after running a migration script.

2014-02-19 15:23:45 -05:00

0008_tools.sh

Migrate tools from the distribution to the tool shed, including but not limited to samtools and fastx_toolkit tools.

2013-09-26 10:05:00 -04:00

0008_tools.xml

Situations where a migration warning would be incorrectly displayed, and tools with matching filenames would be removed from the tool_conf.xml after running a migration script.

2014-02-19 15:23:45 -05:00

0009_tools.sh

Migrate 43 tools from the distribution to the tool shed.

2014-01-27 09:53:14 -05:00

0009_tools.xml

Fix path for bowtie2.

2014-02-20 23:01:05 +00:00

0010_tools.sh

Migrate 46 tools from the distribution to the tool shed: gatk, gops, regional variation.

2014-04-01 11:04:32 -04:00

0010_tools.xml

Fixed tool help image for gops complement.

2014-04-14 13:17:12 -04:00

0011_tools.sh

Migrate 22 tools from the distribution to the tool shed.

2014-05-19 13:01:46 -04:00

0011_tools.xml

Migrate 22 tools from the distribution to the tool shed.

2014-05-19 13:01:46 -04:00

0012_tools.sh

Migrate tools from the distribution to the tool shed.

2014-07-28 11:58:52 -04:00

0012_tools.xml

Migrate tools from the distribution to the tool shed.

2014-07-28 11:58:52 -04:00

migrate_tools.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00