galaxy

genebed_maf_to_fasta.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

interval2maf_pairwise.xml

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

interval2maf.py

Fix limiting species in interval2maf tool.

2009-09-29 21:47:59 -04:00

interval2maf.xml

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

interval_maf_to_merged_fasta.py

First pass at allowing MAF tools to deal with multiple occurrences of a species within a block. Tool versions have been incremented as necessary.

2009-09-04 10:40:16 -04:00

interval_maf_to_merged_fasta.xml

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

maf_by_block_number.py

Allow workflows that contain tools that had parameters added to them after the workflow was created to be edited. Workflows containing tools with added parameters can still not be run until after they are edited and saved. Default values are provided in the workflow building mode.

2009-02-04 14:55:45 -05:00

maf_by_block_number.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

maf_filter.py

First pass at allowing MAF tools to deal with multiple occurrences of a species within a block. Tool versions have been incremented as necessary.

2009-09-04 10:40:16 -04:00

maf_filter.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

maf_limit_size.py

First pass at allowing MAF tools to deal with multiple occurrences of a species within a block. Tool versions have been incremented as necessary.

2009-09-04 10:40:16 -04:00

maf_limit_size.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

maf_limit_to_species.py

First pass at allowing MAF tools to deal with multiple occurrences of a species within a block. Tool versions have been incremented as necessary.

2009-09-04 10:40:16 -04:00

maf_limit_to_species.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

maf_reverse_complement.py

Allow workflows that contain tools that had parameters added to them after the workflow was created to be edited. Workflows containing tools with added parameters can still not be run until after they are edited and saved. Default values are provided in the workflow building mode.

2009-02-04 14:55:45 -05:00

maf_reverse_complement.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

maf_split_by_species.py

First pass at allowing MAF tools to deal with multiple occurrences of a species within a block. Tool versions have been incremented as necessary.

2009-09-04 10:40:16 -04:00

maf_split_by_species.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

maf_stats.py

MAF stats tool will now skip intervals with length less 1.

2011-09-23 09:36:57 -04:00

maf_stats.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

maf_thread_for_species.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

maf_thread_for_species.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

maf_to_bed_code.py

Better approach to altering initial content of output dataset if necessary. The upload tool will now call the data type's groom_output_dataset() method ( a better name than before_setting_metadata since it is not related to metadata ). This will now also run on the cluster.

2009-12-08 11:46:13 -05:00

maf_to_bed.py

Fix MAF to BED tool. This tool should be rewritten to not use a code file, but instead use one of the standard ways to create additional outputs, similar to how maf_to_interval functions.

2009-11-30 15:33:45 -05:00

maf_to_bed.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

maf_to_fasta_concat.py

First pass at allowing MAF tools to deal with multiple occurrences of a species within a block. Tool versions have been incremented as necessary.

2009-09-04 10:40:16 -04:00

maf_to_fasta_multiple_sets.py

First pass at allowing MAF tools to deal with multiple occurrences of a species within a block. Tool versions have been incremented as necessary.

2009-09-04 10:40:16 -04:00

maf_to_fasta.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

maf_to_interval.py

Add a MAF to Interval converter that produces a set of intervals with sequence data.

2009-09-17 11:47:37 -04:00

maf_to_interval.xml

Minor tool help updates.

2011-08-25 10:00:09 -04:00

vcf_to_maf_customtrack.py

Support for VCFv4.0 and misc VCF fixes [Brad Chapman]

2010-08-03 10:43:32 -04:00

vcf_to_maf_customtrack.xml

Tool help updates.

2011-09-21 04:11:07 -04:00