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mvdbeek
2d8fd7bb35
When a workflow step parameter references a deleted dataset, compute_runtime_state() previously discarded validation errors, allowing a raw dict to flow into process_dataset() and crash with AttributeError: 'dict' object has no attribute 'find_conversion_destination'. - Handle step_errors in ToolModule.execute() instead of discarding them - Pass simple_errors=False so check_param preserves ParameterValueError objects with the resolved model instance as parameter_value - Pass the deleted HDA/HDCA as parameter_value in ParameterValueError so callers can inspect it structurally instead of string-matching - Add InvocationFailureStepInputDeleted schema type with hda_id/hdca_id fields, falling back to InvocationFailureWorkflowParameterInvalid for other validation errors - Add frontend rendering for the new step_input_deleted reason - Add deterministic API test using a pause step to control timing Fixes #21969
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The latest information about Galaxy can be found on the `Galaxy Community Hub <https://galaxyproject.org/>`__.
Community support is available at `Galaxy Help <https://help.galaxyproject.org/>`__.
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Galaxy Quickstart
=================
Galaxy requires Python 3.10 or higher. To check your Python version, run:
.. code:: console
$ python -V
Python 3.10.12
Start Galaxy:
.. code:: console
$ sh run.sh
Once Galaxy completes startup, you should be able to view Galaxy in your
browser at: http://localhost:8080
For more installation details please see: https://getgalaxy.org/
Documentation is available at: https://docs.galaxyproject.org/
Tutorials on how to use Galaxy, perform scientific analyses with it, develop Galaxy and its tools, and admin a Galaxy server are at: https://training.galaxyproject.org/
Tools
=====
Tools can be either installed from the Tool Shed or added manually.
For details please see the `tutorial <https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/>`__.
Note that not all dependencies for the tools provided in the
``tool_conf.xml.sample`` are included. To install them please visit
"Manage dependencies" in the admin interface.
Issues and Galaxy Development
=============================
Please see `CONTRIBUTING.md <CONTRIBUTING.md>`_ .