Nate Coraor 9c64fc123e Remove broken and/or obsolete tools.

2014-01-27 13:58:31 -05:00

..

basecoverage.xml

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

cluster.xml

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

complement.xml

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

concat.xml

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

coverage.xml

Update links to reflect Galaxy Wiki moving away from Bitbucket.

2011-07-18 18:10:55 -05:00

flanking_features.py

Fixed a bug in fetch closest features - adjacent upstream feature will now be reported in the output.

2010-12-03 15:07:49 -05:00

flanking_features.xml

Fixed a bug in fetch closest features - adjacent upstream feature will now be reported in the output.

2010-12-03 15:07:49 -05:00

get_flanks.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

get_flanks.xml

Replaced "query" with "dataset" in a number of tool definition XML files.

2013-01-14 16:13:54 -08:00

gops_basecoverage.py

Modified strand column assignment to the NiceReaderWrapper object in basecoverage tool. Previously, if the input had no strand column declared, the object would have a default strand col of 5, and return a coverage of 0 as c5 might not have been a valid strand col.

2010-02-10 14:14:55 -05:00

gops_cluster.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_complement.py

Move ucsc and gbrowse data from static to tool-data/shared.

2008-06-03 18:53:26 +00:00

gops_concat.py

Have GOPs Concatenate tool always respect the provided strand column.

2012-01-18 10:30:08 -05:00

gops_coverage.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_intersect.py

Make gops subtract tool compatible with GFF features rather than lines.

2011-05-03 11:35:21 -04:00

gops_join.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_merge.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_subtract.py

Make gops subtract tool compatible with GFF features rather than lines.

2011-05-03 11:35:21 -04:00

intersect.xml

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

join.xml

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

merge.xml

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

operation_filter.py

fix to mako import and some up-stack error reporting in tools

2012-08-08 12:30:25 -04:00

subtract_query.py

Subtract query tool: make ignoring empty end columns and whitespace optional.

2013-02-07 14:46:49 -05:00

subtract_query.xml

Subtract query tool: make ignoring empty end columns and whitespace optional.

2013-02-07 14:46:49 -05:00

subtract.xml

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

tables_arithmetic_operations.pl

Adding new regional variation tools developed by Zaky from Makova lab.

2010-04-27 15:36:55 -04:00

tables_arithmetic_operations.xml

Adding new regional variation tools developed by Zaky from Makova lab.

2010-04-27 15:36:55 -04:00