galaxy

__init__.py

Move ~/lib/galaxy/tool_shed to ~/lib/tool_shed, and move the ~/lib/galaxy/util/shed_util componets to ~/lib/tool_shed/util.

2013-02-26 15:52:51 -05:00

basic_util.py

Eliminate the Tool Shed's td_common_util.py module by moving the functions to appropriate classes.

2014-05-28 15:49:02 -04:00

commit_util.py

Eliminate the Tool Shed's td_common_util.py module by moving the functions to appropriate classes.

2014-05-28 15:49:02 -04:00

common_install_util.py

Fix import in the Tool Shed's common_install_util module.

2014-06-03 16:34:59 -04:00

common_util.py

Improve exception handling for generated Tool Shed URLs.

2014-05-27 13:32:49 -04:00

container_util.py

Correct usage of "it's" versus "its".

2014-04-17 15:49:32 -04:00

data_manager_util.py

Strip trailing whitespace (and windows line endings) from all python files in lib

2013-08-29 23:39:52 -04:00

datatype_util.py

Continued down-sizing of the Tool Shed's shed_util_common module by moving certain functions to more appropriate locations. Some fixes for adding and removing entries to the Tool Shed's repository registry.

2014-05-28 11:17:50 -04:00

encoding_util.py

Handle combinations of newly defined tool dependencies and repository dependencies that are included in updates being pulled to tool shed repositories installed into Galaxy.

2014-03-26 14:58:08 -04:00

export_util.py

Continued down-sizing of the Tool Shed's shed_util_common module by moving certain functions to more appropriate locations. Some fixes for adding and removing entries to the Tool Shed's repository registry.

2014-05-28 11:17:50 -04:00

hg_util.py

Import fix in the Tool Shed's hg_util.py module.

2014-05-28 16:06:46 -04:00

import_util.py

Use the new hg_util.get_repo_for_repository() function to retrieve a mercurial repo for a repository.

2014-05-21 12:22:16 -04:00

metadata_util.py

Eliminate the Tool Shed's td_common_util.py module by moving the functions to appropriate classes.

2014-05-28 15:49:02 -04:00

readme_util.py

Continued down-sizing of the Tool Shed's shed_util_common module by moving certain functions to more appropriate locations. Some fixes for adding and removing entries to the Tool Shed's repository registry.

2014-05-28 11:17:50 -04:00

repository_dependency_util.py

Use the new hg_util.get_repo_for_repository() function to retrieve a mercurial repo for a repository.

2014-05-21 12:22:16 -04:00

repository_maintenance_util.py

Add appropriate entries into the Tool Shed's repository registry for newly created repositories and undeleted and undeprecated repositories.

2014-05-21 15:37:27 -04:00

review_util.py

Continued down-sizing of the Tool Shed's shed_util_common module by moving certain functions to more appropriate locations. Some fixes for adding and removing entries to the Tool Shed's repository registry.

2014-05-28 11:17:50 -04:00

search_util.py

A bit of refactoring of the tool shed's repository controller.

2013-07-25 11:01:18 -04:00

shed_util_common.py

Eliminate the Tool Shed's td_common_util.py module by moving the functions to appropriate classes.

2014-05-28 15:49:02 -04:00

tool_dependency_util.py

Eliminate the Tool Shed's td_common_util.py module by moving the functions to appropriate classes.

2014-05-28 15:49:02 -04:00

tool_util.py

Continued down-sizing of the Tool Shed's shed_util_common module by moving certain functions to more appropriate locations. Some fixes for adding and removing entries to the Tool Shed's repository registry.

2014-05-28 11:17:50 -04:00

workflow_util.py

The tool shed does not have HDAs, so step annotations cannot be displayed in a workflow in the tool shed.

2013-09-27 16:46:54 -04:00

xml_util.py

Fixes for handling complex repository dependency definitions in tool dependency recipes.

2014-02-26 15:09:43 -05:00