Nicola Soranzo 3d57c22b63 Fix I201 errors from flake8-import-order ...

Also fix Python3 compatibility.
Remove unused method
galaxy.tools.parameters.sanitize.ToolParameterSanitizer.restore_param() .

2016-11-23 18:31:04 +00:00

..

access_libraries.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

bed_convert.xml

dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.

2015-05-15 12:40:52 +01:00

biomart_test.xml

Add more distribution tool citations.

2015-10-05 15:16:50 +01:00

biomart.xml

no parens

2016-04-14 16:59:25 -04:00

cbi_rice_mart.xml

Add the CBI Rice Mart data source tool to the distribution.

2010-06-04 15:49:58 -04:00

data_source.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

ebi_sra.xml

Always access EBI SRA via HTTPS.

2014-09-22 11:23:02 -04:00

eupathdb.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

fetch.py

Fix I201 errors from flake8-import-order

2016-11-23 18:31:04 +00:00

fly_modencode.xml

Update default dbkey for fly_modencode.xml and bump version.

2015-05-20 12:39:59 -04:00

flymine_test.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

flymine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

genbank.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

genbank.xml

dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.

2015-05-15 12:40:52 +01:00

gramene_mart.xml

Enhance tool parameter sanitization. Sanitization rules can now be defined on a per input parameter basis. Resolves ticket #38 and #142.

2009-12-07 10:19:41 -05:00

hapmapmart.xml

adding hapmapmart.xml to tools/data_source

2010-11-18 10:30:27 -05:00

hbvar_filter.py

Fix import order and Python3 compatibility for tools/

2016-09-29 19:26:22 +01:00

hbvar.xml

Rewrite HbVar datasource tool.

2012-05-04 15:35:51 -04:00

import.py

Make some files compatible with Python3

2016-06-03 19:24:46 +01:00

import.xml

dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.

2015-05-15 12:40:52 +01:00

metabolicmine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

microbial_import_code.py

Fix import order and Python3 compatibility for tools/

2016-09-29 19:26:22 +01:00

microbial_import.py

Make some files compatible with Python3

2016-06-03 19:24:46 +01:00

microbial_import.xml

dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.

2015-05-15 12:40:52 +01:00

modmine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

mousemine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

ratmine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

ucsc_tablebrowser_archaea.xml

Add citations to ucsc browser tools.

2015-10-05 15:55:21 +01:00

ucsc_tablebrowser_test.xml

Add citations to ucsc browser tools.

2015-10-05 15:55:21 +01:00

ucsc_tablebrowser.xml

Add citations to ucsc browser tools.

2015-10-05 15:55:21 +01:00

upload.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

upload.xml

XSD discovered tool problems.

2016-09-08 11:40:01 -04:00

worm_modencode.xml

Update default dbkey for worm_modencode.xml and bump version.

2015-05-20 12:42:05 -04:00

wormbase_test.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

wormbase.xml

Update WormBase datasource tool to use WormBase 2.

2012-05-02 17:04:33 -04:00

yeastmine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

zebrafishmine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00