Greg Von Kuster 0f9cff922c Miscellaneous tool bug fixes.

2007-10-09 18:51:50 +00:00

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data_source

Cleaned up functional tests, eliminating some redundant tests and unused test data files. Next step, add many missing tests.

2007-10-03 14:17:41 +00:00

emboss

Changing all tools that use 'text' as file extension to now use 'txt'. We are eliminating the use of 'text' as a file extension within Galaxy and will now use only 'txt' for Text data types.

2007-09-27 12:24:27 +00:00

encode

Have interval readers ignore comments as well as headers.

2007-08-13 15:20:19 +00:00

extract

Get path for twoBitToFa binary from path of executing script.

2007-10-05 00:47:35 +00:00

filters

Miscellaneous tool bug fixes.

2007-10-09 18:51:50 +00:00

hyphy

Adding HYPHY tool to compute dN/dS ratio.

2007-07-11 20:05:20 +00:00

new_operations

Miscellaneous tool bug fixes.

2007-10-09 18:51:50 +00:00

patmat

Changing all tools that use 'text' as file extension to now use 'txt'. We are eliminating the use of 'text' as a file extension within Galaxy and will now use only 'txt' for Text data types.

2007-09-27 12:24:27 +00:00

plotting

Cleaning up ColumnListParameter and related things.

2007-10-08 19:33:23 +00:00

stats

Miscellaneous tool bug fixes.

2007-10-09 18:51:50 +00:00

validation

Cleanup: removing the cookbook package. Bunch and odict move to galaxy.util, tools

2007-07-31 15:45:59 +00:00

visualization

Changing all tools that use 'text' as file extension to now use 'txt'. We are eliminating the use of 'text' as a file extension within Galaxy and will now use only 'txt' for Text data types.

2007-09-27 12:24:27 +00:00