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Get path for twoBitToFa binary from path of executing script.

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Should this binary be part of the distribution?
This commit is contained in:
Daniel Blankenberg
2007-10-05 00:47:35 +00:00
parent 207f3ce455
commit 96a90a5072
1 changed files with 3 additions and 1 deletions
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tools/extract/twoBitToFa_wrapper.py
+3 -1
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@@ -67,7 +67,9 @@ else:
end = fields[int(end_col)-1]
#Run twoBitToFa program
tmpfile = tempfile.NamedTemporaryFile()
cmdline = "tools/extract/twoBitToFa " + filepath.strip() + " " + tmpfile.name + " -seq=" + name + " -start=" + start + " -end=" + end + " > /dev/null 2>&1"
two_bit_cmd = os.path.join(os.path.split(sys.argv[0])[0], "twoBitToFa")
cmdline = two_bit_cmd + " " + filepath.strip() + " " + tmpfile.name + " -seq=" + name + " -start=" + start + " -end=" + end + " > /dev/null 2>&1"
#cmdline = "tools/extract/twoBitToFa " + filepath.strip() + " " + tmpfile.name + " -seq=" + name + " -start=" + start + " -end=" + end + " > /dev/null 2>&1"
os.system(cmdline)
header = tmpfile.readline()
seq = tmpfile.read()