mvdbeek 21fd74e640 Use subworkflow index when setting auto-label
Previously this would reference the parent workflow index, while the
get_data module would use the subworkflow index. This means defining
workflows worked fine, but executing would fail when trying to find the
output to replace. Using the subworkflow index here seems like the
correct thing to do.

Fixes https://github.com/galaxyproject/galaxy/issues/6560
2018-08-06 15:55:27 +02:00
2018-06-22 19:50:43 +02:00
2017-12-01 11:09:57 +00:00
2016-09-01 13:17:43 -04:00
2017-12-13 10:42:45 -08:00
2018-06-14 10:03:05 -04:00
2017-04-07 17:13:56 +02:00
2017-09-25 12:24:46 +01:00
2017-05-22 10:04:31 -04:00
2017-11-09 12:02:06 -05:00
2018-06-06 18:29:15 +01:00
2017-05-16 21:51:37 +00:00
2017-10-24 11:29:09 +01:00
2017-12-15 17:33:40 +00:00

.. figure:: https://galaxyproject.org/images/galaxy-logos/galaxy_project_logo.jpg
   :alt: Galaxy Logo

The latest information about Galaxy is available via `https://galaxyproject.org/ <https://galaxyproject.org/>`__

.. image:: https://img.shields.io/badge/questions-galaxy%20biostar-blue.svg
    :target: https://biostar.usegalaxy.org
    :alt: Ask a question

.. image:: https://img.shields.io/badge/chat-irc.freenode.net%23galaxyproject-blue.svg
    :target: https://webchat.freenode.net/?channels=galaxyproject
    :alt: Chat on irc

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    :target: https://gitter.im/galaxyproject/Lobby
    :alt: Chat on gitter

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    :target: https://docs.galaxyproject.org/en/master/
    :alt: Release Documentation

.. image:: https://travis-ci.org/galaxyproject/galaxy.svg?branch=dev
    :target: https://travis-ci.org/galaxyproject/galaxy
    :alt: Inspect the test results

Galaxy Quickstart
=================

Galaxy requires Python 2.7 To check your python version, run:

.. code:: console

    $ python -V
    Python 2.7.3

Start Galaxy:

.. code:: console

    $ sh run.sh

Once Galaxy completes startup, you should be able to view Galaxy in your
browser at:

http://localhost:8080

Configuration & Tools
=====================

You may wish to make changes from the default configuration. This can be
done in the ``config/galaxy.ini`` file.

Tools can be either installed from the Tool Shed or added manually.
 For details please see the `tutorial <https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/>`__.
Note that not all dependencies for the tools provided in the
``tool_conf.xml.sample`` are included. To install them please visit
"Manage dependencies" in the admin interface.

Issues and Galaxy Development
=============================

Please see `CONTRIBUTING.md <CONTRIBUTING.md>`_ .

Roadmap
=============================

Interested in the next steps for Galaxy? Take a look at the `roadmap <https://github.com/galaxyproject/galaxy/issues/1928>`__.
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