Marius van den Beek 57e24c2123 Merge pull request #22981 from mvdbeek/custom-tool-container-agent ...

[26.1] Custom-tool agent: verified container resolution + authoring safeguards (with a reusable mulled-recommend CLI)

2026-07-13 10:22:38 +02:00

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agents

Pre-warm the IWC workflow manifest cache on a celery beat schedule. The new

2026-06-03 10:26:52 -04:00

app

Add container resolution and authoring safeguards to the custom tool agent

2026-07-07 16:39:17 +02:00

auth

Enable flake8-comprehensions ruff rules

2024-03-09 19:11:20 +00:00

authnz

Merge pull request #22484 from AustralianBioCommons/drs-access-token

2026-05-21 20:37:50 -04:00

config

python packages: convert to "src" layout

2026-04-15 15:16:36 +02:00

data

Merge pull request #23089 from mvdbeek/fix-h5grove-unounded

2026-07-10 13:22:14 +02:00

files

Drop exposed S3 checksum settings; keep endpoint-based default only

2026-06-29 13:19:45 +02:00

job_execution

Remove transaction helper from test.unit.job_execution

2025-01-23 11:39:24 -05:00

job_metrics

Add binary mode to nice_size/size_to_bytes for memory contexts

2026-03-18 15:49:27 -04:00

model

Migrate WES pagination to unified keyset-based approach

2026-01-20 14:30:53 -05:00

objectstore

Drop exposed S3 checksum settings; keep endpoint-based default only

2026-06-29 13:19:45 +02:00

schema

Remove REFINE_QUERY from ActionType

2026-02-07 07:23:50 -05:00

selenium

Fix missing package dependencies

2026-04-12 22:44:45 +01:00

test_base

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test_driver

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tool_shed

Unit tests for stock converter serving and safe-version fallback

2026-06-18 09:57:24 -04:00

tool_shed_schema

New packages galaxy-tool-util-models, galaxy-tool-shed-schema.

2025-04-16 12:47:37 +02:00

tool_util

Add container resolution and authoring safeguards to the custom tool agent

2026-07-07 16:39:17 +02:00

tool_util_models

Require version on all user tool sources

2026-06-18 21:47:04 +02:00

util

Drop exposed S3 checksum settings; keep endpoint-based default only

2026-06-29 13:19:45 +02:00

web_framework

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web_stack

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webapps

Expose a recommend_biocontainer tool on the MCP server

2026-07-07 16:39:18 +02:00

workflow

Move compute_recursive_job_state_summary into model

2026-01-21 14:44:55 +01:00

workflows

Include hidden intermediates in workflow extraction summary (#22967)

2026-06-18 16:00:18 -04:00

__init__.py

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test_galaxy_transactions.py

Remove transaction helper from test/unit.test_galaxy_transactions

2025-01-23 11:44:03 -05:00