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Nicola Soranzo
112d34f32c
Fix issue found when testing planemo in https://github.com/galaxyproject/planemo/pull/1224#issuecomment-1086201126 : ``` 2022-04-01T14:44:05.3964452Z [2022-04-01 14:41:23 +0000] [6904] [WARNING] Invalid HTTP request received. 2022-04-01T14:44:05.3964583Z Traceback (most recent call last): 2022-04-01T14:44:05.3965087Z File "/tmp/planemo-test-workspace/gx_venv_3/lib/python3.7/site-packages/uvicorn/protocols/http/h11_impl.py", line 136, in handle_events 2022-04-01T14:44:05.3965218Z event = self.conn.next_event() 2022-04-01T14:44:05.3965652Z File "/tmp/planemo-test-workspace/gx_venv_3/lib/python3.7/site-packages/h11/_connection.py", line 443, in next_event 2022-04-01T14:44:05.3965801Z exc._reraise_as_remote_protocol_error() 2022-04-01T14:44:05.3966277Z File "/tmp/planemo-test-workspace/gx_venv_3/lib/python3.7/site-packages/h11/_util.py", line 76, in _reraise_as_remote_protocol_error 2022-04-01T14:44:05.3966383Z raise self 2022-04-01T14:44:05.3966831Z File "/tmp/planemo-test-workspace/gx_venv_3/lib/python3.7/site-packages/h11/_connection.py", line 425, in next_event 2022-04-01T14:44:05.3966977Z event = self._extract_next_receive_event() 2022-04-01T14:44:05.3967445Z File "/tmp/planemo-test-workspace/gx_venv_3/lib/python3.7/site-packages/h11/_connection.py", line 367, in _extract_next_receive_event 2022-04-01T14:44:05.3967588Z event = self._reader(self._receive_buffer) 2022-04-01T14:44:05.3968049Z File "/tmp/planemo-test-workspace/gx_venv_3/lib/python3.7/site-packages/h11/_readers.py", line 73, in maybe_read_from_IDLE_client 2022-04-01T14:44:05.3968225Z request_line_re, lines[0], "illegal request line: {!r}", lines[0] 2022-04-01T14:44:05.3968629Z File "/tmp/planemo-test-workspace/gx_venv_3/lib/python3.7/site-packages/h11/_util.py", line 88, in validate 2022-04-01T14:44:05.3968781Z raise LocalProtocolError(msg) 2022-04-01T14:44:05.3969215Z h11._util.RemoteProtocolError: illegal request line: bytearray(b'--a250a2c0546542508998e4e0ac8f1001') 2022-04-01T14:44:05.3969497Z [2022-04-01 14:41:23 +0000] [6904] [WARNING] Invalid HTTP request received. 2022-04-01T14:44:05.3969623Z Traceback (most recent call last): 2022-04-01T14:44:05.3970105Z File "/tmp/planemo-test-workspace/gx_venv_3/lib/python3.7/site-packages/uvicorn/protocols/http/h11_impl.py", line 136, in handle_events 2022-04-01T14:44:05.3970231Z event = self.conn.next_event() 2022-04-01T14:44:05.3970655Z File "/tmp/planemo-test-workspace/gx_venv_3/lib/python3.7/site-packages/h11/_connection.py", line 423, in next_event 2022-04-01T14:44:05.3971003Z raise RemoteProtocolError("Can't receive data when peer state is ERROR") 2022-04-01T14:44:05.3971287Z h11._util.RemoteProtocolError: Can't receive data when peer state is ERROR ```
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:alt: Galaxy Logo
The latest information about Galaxy can be found on the `Galaxy Community Hub <https://galaxyproject.org/>`__.
Community support is available at `Galaxy Help <https://help.galaxyproject.org/>`__.
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:target: https://travis-ci.org/galaxyproject/galaxy
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Galaxy Quickstart
=================
Galaxy requires Python 3.7 . To check your Python version, run:
.. code:: console
$ python -V
Python 3.7.6
Start Galaxy:
.. code:: console
$ sh run.sh
Once Galaxy completes startup, you should be able to view Galaxy in your
browser at: http://localhost:8080
For more installation details please see: https://getgalaxy.org/
Documentation is available at: https://docs.galaxyproject.org/
Tutorials on how to use Galaxy, perform scientific analyses with it, develop Galaxy and its tools, and admin a Galaxy server are at: https://training.galaxyproject.org/
Tools
=====
Tools can be either installed from the Tool Shed or added manually.
For details please see the `tutorial <https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/>`__.
Note that not all dependencies for the tools provided in the
``tool_conf.xml.sample`` are included. To install them please visit
"Manage dependencies" in the admin interface.
Issues and Galaxy Development
=============================
Please see `CONTRIBUTING.md <CONTRIBUTING.md>`_ .