Guruprasad Anada 0e29e97366 Committing changes to 'extract genomic dna' tool - twobit file will be opened only once per job. (Courtesy: Gordon).

2009-07-20 16:57:55 -04:00

..

annotation_profiler

Missed adding chrominfo.py, due to my hardcoded paths in test environ. Should be good now?

2009-04-23 14:42:35 -04:00

data_destination

merging from central

2008-10-28 11:28:15 -04:00

data_source

Initial pass at allowing the setting of certain metadata parameters on upload (controlled via a flag). This allows the user to specify the 'base_name' to be used for Rgenetics datatypes, etc. Bunch of cleanup needed in upload.

2009-07-15 14:11:35 -04:00

emboss_5

Forgot to eliminate the emboss path...

2008-04-25 19:07:26 +00:00

encode

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

extract

Committing changes to 'extract genomic dna' tool - twobit file will be opened only once per job. (Courtesy: Gordon).

2009-07-20 16:57:55 -04:00

fasta_tools

remove the usage of hast tables in the fasta-tools

2009-01-19 15:47:02 -05:00

fastx_toolkit

Integration of Assaf Gordon's Solexa toolkit into Galaxy - (all tools except 3 are working fine).

2009-02-20 14:17:46 -05:00

filters

A tiny bug fix for Sort tool - the delimiter is now defaulted to tab.

2009-06-25 15:34:05 -04:00

hyphy

Fixes to get functional tests working.

2009-02-03 18:34:27 -05:00

maf

Accidently commited a testing change, removed

2009-04-29 14:47:18 -04:00

metag_tools

Replacing \"qual\" datatype with 3 new datatypes: qualsolid, qual454 and qualsolexa.

2009-04-29 11:53:22 -04:00

new_operations

- Performance of indexers much improved.

2009-04-23 13:46:52 -04:00

plotting

Bug fixes for histogram liftover and grouping tools.

2009-05-29 11:07:18 -04:00

regVariation

A tiny bug fix for linear regression tool.

2009-04-30 11:07:34 -04:00

solid_tools

MAQ mapping pipeline for SOLiD data

2009-05-13 21:54:45 -04:00

sr_mapping

A simple tool for merging columns. Surprisingly useful for some analyses and also requested by a user lest Friday

2009-02-09 23:57:41 -05:00

stats

Bug fixes for histogram liftover and grouping tools.

2009-05-29 11:07:18 -04:00

taxonomy

Fixed finf_diag_hits plus a ttypo correction

2009-04-21 09:36:42 -04:00

validation

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

visualization

Using deprecated sha module in place of hashlib to keep compatibility with python2.4

2009-02-05 15:34:31 -05:00