Matthias Bernt 07aa429ff6 linting: restore possibiity to skip old linter function names
until 23.2 we had linter functions lint_xyz in linter modules xyz.
with 24.0 we splited the functions linter classes.

lint contexts allow to skip linters by name (xyz for the old functions
now the class name), i.e. we can not skip by the old names anymore.
this may break planemo command lines xref
https://github.com/galaxyproject/planemo/pull/1441#discussion_r1587995463.

here I suggest to add a check for the module name against the names
listed in the skip list. this restores the possibility to skip by old
linter names and adds the possibility to skip whole linter modules
(which might be handy anyway).

tried to add some tests that hopefully help to maintain this
functionality.
2024-05-03 13:05:15 +02:00
2024-04-24 17:38:58 +02:00
2024-04-24 17:08:06 +02:00
2024-05-02 12:27:06 +02:00
2024-02-28 12:08:22 +01:00
2024-02-21 12:11:40 +05:30
2024-03-04 13:14:50 +00:00

.. figure:: https://galaxyproject.org/images/galaxy-logos/galaxy_project_logo.jpg
   :alt: Galaxy Logo

The latest information about Galaxy can be found on the `Galaxy Community Hub <https://galaxyproject.org/>`__.

Community support is available at `Galaxy Help <https://help.galaxyproject.org/>`__.

.. image:: https://img.shields.io/badge/chat-gitter-blue.svg
    :target: https://gitter.im/galaxyproject/Lobby
    :alt: Chat on gitter

.. image:: https://img.shields.io/badge/chat-irc.freenode.net%23galaxyproject-blue.svg
    :target: https://webchat.freenode.net/?channels=galaxyproject
    :alt: Chat on irc

.. image:: https://img.shields.io/badge/release-documentation-blue.svg
    :target: https://docs.galaxyproject.org/en/master/
    :alt: Release Documentation

.. image:: https://travis-ci.org/galaxyproject/galaxy.svg?branch=dev
    :target: https://travis-ci.org/galaxyproject/galaxy
    :alt: Inspect the test results

Galaxy Quickstart
=================

Galaxy requires Python 3.8 . To check your Python version, run:

.. code:: console

    $ python -V
    Python 3.8.18

Start Galaxy:

.. code:: console

    $ sh run.sh

Once Galaxy completes startup, you should be able to view Galaxy in your
browser at: http://localhost:8080

For more installation details please see: https://getgalaxy.org/

Documentation is available at: https://docs.galaxyproject.org/

Tutorials on how to use Galaxy, perform scientific analyses with it, develop Galaxy and its tools, and admin a Galaxy server are at: https://training.galaxyproject.org/

Tools
=====

Tools can be either installed from the Tool Shed or added manually.
For details please see the `tutorial <https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/>`__.
Note that not all dependencies for the tools provided in the
``tool_conf.xml.sample`` are included. To install them please visit
"Manage dependencies" in the admin interface.

Issues and Galaxy Development
=============================

Please see `CONTRIBUTING.md <CONTRIBUTING.md>`_ .
Languages
Python 66.4%
Vue 12.9%
TypeScript 11.3%
JavaScript 3.7%
Jupyter Notebook 2.7%
Other 2.8%