Marcus Christie 0792bcd6c0 Merge remote-tracking branch 'upstream/dev' into idp-logout

2020-01-12 14:07:08 -05:00

..

authnz

FIx py3 compat and add unit test

2019-12-24 11:02:02 -05:00

config

Refactor tool_shed webapp out of Galaxy.

2019-11-11 12:32:19 -05:00

dataset_collections

Make galaxy.model.dataset_collections more usable outside manager context.

2019-03-25 16:50:40 -04:00

datatypes

Datatype-based validation framework.

2019-08-22 15:45:25 -04:00

jobs

Re-locate version path to a writable directory in containers.

2019-12-19 17:32:40 -05:00

managers

PDF generation for reports.

2019-12-18 17:18:05 -05:00

queue_worker

Fallback for python2 not having math.inf

2019-10-26 18:42:45 +02:00

shed_unit

Cleanup random tool_shed imports in Galaxy.

2019-11-11 00:28:49 -05:00

tool_util

Allow testing command versions in tools - tests, XSD.

2019-12-19 17:34:31 -05:00

tools

Use @pytest.mark.skipif decorator

2020-01-09 14:40:48 +01:00

unittest_utils

Merge pull request #8930 from jmchilton/extended_metadata

2019-11-13 12:43:36 +01:00

util

Refactor reading config properties from a file

2019-08-14 19:11:04 -04:00

visualizations

Do not encode a rendered Mako template

2018-07-01 00:19:00 -07:00

web

Work around re._pattern_type rename in python 3.7

2019-10-22 23:15:27 +02:00

workflows

Eliminate extensions=['input_collection'].

2019-12-11 12:26:32 -05:00

__init__.py

Fix import order for cron/, scripts/ and test/

2017-09-25 23:44:39 +01:00

test_auth.py

Update test_auth.py

2019-07-08 17:52:36 +02:00

test_compression_util.py

Use more elegant way to test stream type

2019-07-21 10:59:09 +02:00

test_containers.py

linting

2019-07-08 13:07:56 +02:00

test_fix_type_error.py

Use getfullargspec on python3

2019-04-29 11:52:33 +02:00

test_galaxy_mapping.py

Track workflow step input definitions in our model.

2018-11-15 21:34:02 +01:00

test_galaxy_transactions.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

test_id_encode_decode.py

Refactor galaxy.web.security into galaxy.security.idencoding.

2019-03-19 14:28:31 -04:00

test_lazy_process.py

…

test_markdown_validate.py

Separate markdown parse out into own module for reuse.

2019-12-16 10:13:33 -05:00

test_model_copy.py

Implement simple history copy unit tests.

2018-07-24 13:09:06 -04:00

test_model_discovery.py

Add HDCA support to model persistence script.

2019-04-17 08:51:18 -04:00

test_model_store.py

Explicitly create extra_files_path when discovering outputs with extra files

2019-05-27 14:37:53 +02:00

test_objectstore.py

Script to populate datasets/libraries directly into an objectstore and model store.

2019-04-10 11:01:09 -04:00

test_remote_shell.py

Tweak paramiko missing hostkey policies

2020-01-09 14:40:48 +01:00

test_routes.py

Config: drop redundant template_cache attribute

2019-11-01 15:46:00 +00:00

test_rule_utils.py

Move galaxy testing utilities into more sane package structure.

2019-11-12 09:03:06 -05:00

test_security_passwords.py

More password encoding handling fixes.

2018-05-23 13:01:05 -04:00

test_sockets.py

Fix I201 errors from flake8-import-order

2016-11-23 18:31:04 +00:00

test_sqlite_utils.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

test_topsort.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

test_verify.py

Move tools/verify/ into tool_util/verify/

2019-07-12 18:06:53 +01:00

tools_support.py

Create galaxy-tool-util package.

2019-05-16 16:45:25 -04:00