Daniel Blankenberg a1fedcf265 Fix for EMBOSS:fuzztran change in commandline parameters.

2007-07-02 16:06:33 +00:00

..

phylip

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

phylipnew

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

emboss_antigenic.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_backtranseq.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_banana.pl

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

emboss_banana.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_biosed.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_btwisted.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_cai_custom.xml

Limit input files format of EMBOSS tools to fasta

2007-05-04 19:42:41 +00:00

emboss_cai.xml

Limit input files format of EMBOSS tools to fasta

2007-05-04 19:42:41 +00:00

emboss_chaos.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_charge.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_checktrans.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_chips.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_cirdna.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_codcmp.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_coderet.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_compseq.xml

Limit input files format of EMBOSS tools to fasta

2007-05-04 19:42:41 +00:00

emboss_cpgplot_wrapper.pl

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

emboss_cpgplot.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_cpgreport.xml

Limit input files format of EMBOSS tools to fasta

2007-05-04 19:42:41 +00:00

emboss_cusp.xml

Limit input files format of EMBOSS tools to fasta

2007-05-04 19:42:41 +00:00

emboss_cutseq.xml

Limit input files format of EMBOSS tools to fasta

2007-05-04 19:42:41 +00:00

emboss_dan.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_degapseq.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_descseq.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_diffseq.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_digest.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_dotmatcher.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_dotpath.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_dottup.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_dreg.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_einverted.xml

Limit input files format of EMBOSS tools to fasta

2007-05-04 19:42:41 +00:00

emboss_epestfind.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_eprimer3.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_equicktandem.xml

Limit input files format of EMBOSS tools to fasta

2007-05-04 19:42:41 +00:00

emboss_est2genome.xml

Limit input files format of EMBOSS tools to fasta

2007-05-04 19:42:41 +00:00

emboss_etandem.xml

Limit input files format of EMBOSS tools to fasta

2007-05-04 19:42:41 +00:00

emboss_extractfeat.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_extractseq.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_format_corrector.py

Add the ability to define datatypes in the configuration file.

2007-06-01 19:25:19 +00:00

emboss_freak.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_fuzznuc.xml

Fix for EMBOSS:fuzznuc. Update command line args from version 3 to 4.

2007-05-30 17:46:37 +00:00

emboss_fuzzpro.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_fuzztran.xml

Fix for EMBOSS:fuzztran change in commandline parameters.

2007-07-02 16:06:33 +00:00

emboss_garnier.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_geecee.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_getorf.xml

Limit input files format of EMBOSS tools to fasta

2007-05-04 19:42:41 +00:00

emboss_helixturnhelix.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_hmoment.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_iep.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_infoseq_wrapper.pl

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

emboss_infoseq.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_isochore.xml

Limit input files format of EMBOSS tools to fasta

2007-05-04 19:42:41 +00:00

emboss_lindna.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_marscan.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_maskfeat.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_maskseq.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_matcher.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_megamerger.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_merger.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_msbar.xml

Limit input files format of tool msbar, needle, newcpgseek to fasta

2007-05-08 18:36:31 +00:00

emboss_multiple_outputfile_wrapper.pl

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

emboss_needle.xml

Limit input files format of tool msbar, needle, newcpgseek to fasta

2007-05-08 18:36:31 +00:00

emboss_newcpgreport.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_newcpgseek.xml

Limit input files format of tool msbar, needle, newcpgseek to fasta

2007-05-08 18:36:31 +00:00

emboss_newseq.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_noreturn.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_notseq.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_nthseq.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_octanol.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_oddcomp.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_palindrome.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_pasteseq.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_patmatdb.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_pepcoil.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_pepinfo.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_pepnet.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_pepstats.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_pepwheel.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_pepwindow.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_pepwindowall.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_plotcon.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_plotorf.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_polydot.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_preg.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_prettyplot.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_prettyseq.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_primersearch.xml

Fix for EMBOSS:primersearch. This resulted from a change in command line parameters from EMBOSS version 3 to 4.

2007-05-30 14:36:09 +00:00

emboss_revseq.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_seqmatchall.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_seqret.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_showfeat.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_showorf.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_shuffleseq.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_sigcleave.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_single_outputfile_wrapper.pl

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

emboss_sirna.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_sixpack.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_skipseq.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_splitter.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_stretcher.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_stssearch.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_supermatcher.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_syco.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_tcode.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_textsearch.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_tmap.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_tranalign.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_transeq.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_trimest.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_trimseq.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_twofeat.xml

Fix help link for all EMBOSS tools.

2007-01-11 16:47:46 +00:00

emboss_union.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_vectorstrip.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_water.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_wobble.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_wordcount.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00

emboss_wordmatch.xml

Limit input files format of Emboss tools to fasta.

2007-05-10 19:37:12 +00:00