mvdbeek
88a986c578
Update version to 22.05.1.dev0
2022-08-22 23:14:27 +02:00
mvdbeek
b5b63da659
Merge branch 'release_22.01' into release_22.05
2022-08-22 21:59:39 +02:00
mvdbeek
0a69d3d882
Update version to 22.1.2.dev0
2022-08-22 21:57:17 +02:00
mvdbeek
dc56fc4e61
Update version to 22.01.1
2022-08-22 21:47:47 +02:00
Marius van den Beek
4258b4e075
Merge pull request #14492 from mvdbeek/missing_image
...
[22.05] Add missing image to user facing release notes
2022-08-22 21:06:54 +02:00
mvdbeek
a8ff8c62b1
Add missing image
2022-08-22 21:05:59 +02:00
Marius van den Beek
c5a2d38c26
Merge pull request #14211 from mvdbeek/22.05_release_notes
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[22.05] 22.05 release notes
2022-08-22 18:42:24 +02:00
mvdbeek
aa577230f8
Drop placeholders
2022-08-22 17:47:37 +02:00
mvdbeek
3d24ef2d91
Add last PR
2022-08-22 17:37:48 +02:00
Marius van den Beek
b5ae0ac5d8
Apply Magda's typo and spelling fixes
2022-08-22 17:02:39 +02:00
Marius van den Beek and John Davis
0d40797e03
Add Alembic to admin announcement
...
Co-authored-by: John Davis <jdavcs@gmail.com >
2022-08-22 16:34:03 +02:00
Marius van den Beek
0ac10db716
Merge pull request #14488 from nsoranzo/release_22.05_fix_docs
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[22.05] Doc fixes
2022-08-21 14:52:48 +02:00
Nicola Soranzo
4fcbe80268
Doc fixes
2022-08-19 18:33:20 +01:00
Nicola Soranzo
95326249cd
Update application documentation
...
with:
```
make -C doc/ updaterst
```
2022-08-19 17:37:27 +01:00
mvdbeek
2f34e4070c
Drop overly verbose changes
2022-08-19 17:11:57 +02:00
Nicola Soranzo
b5a75cac27
Merge branch 'release_22.01' into release_22.05
2022-08-19 15:28:58 +01:00
mvdbeek
2c12d3a55f
Add newer PRs
2022-08-19 16:25:38 +02:00
mvdbeek
18a9a39d97
Write admin announce, add deferred datasets to user announcement
2022-08-19 16:11:41 +02:00
Marius van den Beek
cccdb496b8
Merge pull request #14482 from davelopez/22.05_fix_query_parameter_lists
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[22.05] Fix Jobs API index to accept query parameters as lists
2022-08-19 13:23:32 +02:00
mvdbeek
c9a8e4f63e
Update PRs
2022-08-19 12:52:11 +02:00
Dannon
d1c66d61b5
Merge pull request #14473 from mvdbeek/change_datatype_problems
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[22.05] Fix effective datatype in workflow editor node terminals
2022-08-19 06:32:49 -04:00
davelopez
1545b9da99
Simplify query_parameter_as_list
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And render the repeated parameter input in the docs.
The first parameter can be a comma-separated list of values
2022-08-19 12:30:53 +02:00
4dbb26fc13
Update announce user notes
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Co-authored-by: M Bernt <m.bernt@ufz.de >
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2022-08-19 12:29:25 +02:00
John Davis
3fddd4da3a
Add release testing team
2022-08-19 12:29:25 +02:00
Helena Rasche
6261d6af2d
add user facing release notes
2022-08-19 12:29:25 +02:00
mvdbeek
857c598065
Update a couple PR titles, strip trailing . from PR titles
2022-08-19 12:29:25 +02:00
mvdbeek
ccfe010561
Draft release notes
2022-08-19 12:29:24 +02:00
Marius van den Beek
65c724ec66
Merge pull request #14475 from jancrichter/patch-1
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[22.05] Grep1 tool: fix keep_header option
2022-08-19 11:43:38 +02:00
Marius van den Beek
7e24d4555f
Merge pull request #14483 from bernt-matthias/topic/elem-none
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[22.05] Fix xml deprecation warning in ``parse_requirements_from_xml``
2022-08-19 11:41:23 +02:00
Matthias Bernt
b1e7b895b5
fix deprection warning
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which pops up at every `planemo lint`:
```
galaxy/tool_util/deps/requirements.py:348: FutureWarning: The behavior of this method will change in future versions. Use specific 'len(elem)' or 'elem is not None' test instead.
```
2022-08-19 10:29:06 +02:00
davelopez
1d59487365
Add unit tests for query_parameter_as_list
2022-08-19 08:59:02 +02:00
Marius van den Beek
30dc1bf4f9
Merge pull request #14440 from qiagu/dynamic_options
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[22.01] Revert startswith of tool parameter options
2022-08-18 19:21:23 +02:00
davelopez
05ed92688c
Fix Jobs API index endpoint
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Use the `query_parameter_as_list` dependency to support multiple ways of providing lists of values while rendering the API docs as a single string query parameter.
2022-08-18 18:39:34 +02:00
davelopez
1a103279af
Add query_parameter_as_list dependable
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Supports declaring query parameters as 'listified'
2022-08-18 18:37:10 +02:00
mvdbeek
446b07b4c0
Adjust workflow safe tool version update range for Grep1
2022-08-18 17:50:21 +02:00
jancrichter
912dc47c8a
bump version
2022-08-18 17:49:06 +02:00
jancrichter
f9f7e97043
adjust tests to correctly test for retainment of header
2022-08-18 17:49:05 +02:00
jancrichter
7b10be9cb8
Append grep results to avoid overwriting header
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Currently, if "keep_header" is true, the header is copied to the output file, but is then overwritten by the grep results.
2022-08-18 17:49:04 +02:00
Marius van den Beek
01a4915e29
Merge pull request #14476 from bernt-matthias/topic/linter-fixes
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[22.05] Tool linter bug fixes
2022-08-18 17:35:51 +02:00
Marius van den Beek
e511595c7f
Merge pull request #14480 from bernt-matthias/topic/scool-datatype
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[22.05] Add scool datatype
2022-08-18 17:20:08 +02:00
M Bernt and Marius van den Beek
2bd8044a4d
Remove comment
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Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com >
2022-08-18 17:18:36 +02:00
Matthias Bernt
d7006d2429
add scool datatype
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used in IUC schicexplorer
2022-08-18 16:50:47 +02:00
Marius van den Beek
da72674d42
Merge pull request #14479 from mvdbeek/fix_error_message
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[22.05] Update error message when building ucsc_build_sites.txt fails
2022-08-18 16:47:50 +02:00
mvdbeek
f2fbfe49d6
Update error message when building ucsc_build_sites.txt fails
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Fixes https://github.com/galaxyproject/galaxy/issues/14478
2022-08-18 16:33:47 +02:00
Matthias Bernt
df81e5568c
explicitly test for None
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found one tool where argument was "" due to macro usage
2022-08-18 14:35:11 +02:00
Matthias Bernt
d8036a8418
f-string fix
2022-08-18 14:35:11 +02:00
Matthias Bernt
b41bc6d336
allow no_options validator for data and data_collection
2022-08-18 14:35:11 +02:00
Matthias Bernt
1ede9e839d
xsd: allow 0 for bytes
2022-08-18 14:35:11 +02:00
Matthias Bernt
5f0fbb061b
fix docs
2022-08-18 14:30:14 +02:00
Matthias Bernt
8ef9ef4383
fix test
2022-08-18 14:28:55 +02:00
mvdbeek