 Dave Bouvier
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ff28741642
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Explicitly uninstall tool dependencies that are in an error state.
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2013-10-14 16:46:41 -04:00 |
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Aysam Guerler
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3e8f294ea5
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Improvements for the upload box
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2013-10-14 16:35:09 -04:00 |
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Aysam Guerler
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b30c8e126d
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Upload box add user validation
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2013-10-14 15:11:49 -04:00 |
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Dave Bouvier
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a948eaa352
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Fill form by name instead of number.
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2013-10-14 13:55:39 -04:00 |
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Aysam Guerler
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fbffe7f8e7
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Add logging information to upload box
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2013-10-14 13:52:41 -04:00 |
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Martin Cech
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d81c761fa6
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registration form tweaks, preventing the form to be accidentally submitted multiple times (creating duplicate users), includes user-side basic validation
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2013-10-14 12:06:34 -04:00 |
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Nate Coraor
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ff8366081b
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Revert changes from 384240b8cd29 that result in a failure to detect job completion in the drmaa runner on DRMs that do not retain jo
b information once a job has exited the queue.
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2013-10-14 12:00:57 -04:00 |
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Greg Von Kuster
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2a5c2cdf2d
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Make communication between Galaxy and the Tool Shed to get status information for installed repositories backward compatible to the 12/20/12 Galaxy release.
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2013-10-14 11:12:07 -04:00 |
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Jeremy Goecks
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a62bdf7d2f
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Update Trackster reference track config. Pack script.
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2013-10-13 17:39:27 -04:00 |
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Jeremy Goecks
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cc8bf8d613
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Trackster: prevent inadvertent keyboard navigation when configuring track.
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2013-10-13 17:09:39 -04:00 |
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Jeremy Goecks
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191880fb5c
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Trackster: fold name attribute into object preferences.
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2013-10-13 17:00:27 -04:00 |
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Jeremy Goecks
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b0e4c28a0b
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Trackster: fold content_visible flag into config.
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2013-10-13 16:28:13 -04:00 |
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Jeremy Goecks
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076c2c4b5f
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Automated merge.
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2013-10-13 15:46:27 -04:00 |
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Jeremy Goecks
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1659128179
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Trackster: simplify constructor and config logic using object attributes.
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2013-10-13 15:39:08 -04:00 |
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Aysam Guerler
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b61c2d528b
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Fix upload box plugin
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2013-10-12 13:07:00 -04:00 |
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Jeremy Goecks
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f40d396f4f
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Trackster: clean up link attributes.
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2013-10-11 21:59:34 -04:00 |
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Jeremy Goecks
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c8ec1df754
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JSHint-driven Trackster code cleanup.
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2013-10-11 17:27:18 -04:00 |
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Jeremy Goecks
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be3e3864a8
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More trackster cleanup.
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2013-10-11 16:34:28 -04:00 |
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Aysam Guerler
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03f09b47cc
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Fix for removed galaxy.css
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2013-10-11 16:09:16 -04:00 |
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Daniel Blankenberg
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e9d2043132
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Better handling of creating peek for tabular files when metadata is missing.
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2013-10-11 15:03:13 -04:00 |
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Aysam Guerler
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18237898d1
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Deactivate upload icon
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2013-10-11 14:58:57 -04:00 |
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Aysam Guerler
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aebfcd69bb
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Adjustments for IE10, upload front end
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2013-10-11 14:57:45 -04:00 |
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Aysam Guerler
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8313e096c1
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Add datatypes to api and connect with file type selector of the upload front end
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2013-10-11 14:29:38 -04:00 |
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Daniel Blankenberg
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ef4641e6ca
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Unicodify dependency installation stderr and stdout
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2013-10-11 13:01:22 -04:00 |
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Aysam Guerler
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051845cd7d
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Merge
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2013-10-11 12:12:19 -04:00 |
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Aysam Guerler
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5b667b0937
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Use state event listener to queue uploads
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2013-10-11 12:04:26 -04:00 |
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Jeremy Goecks
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5d1ffac35b
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Visualization framework: code cleanup.
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2013-10-11 12:03:55 -04:00 |
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Jeremy Goecks
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7d6d29158a
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Trackster: (a) fix bug that unintentionally modified drawing region; (b) more reference track cleanup; (c) remove console logging statements. Pack scripts.
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2013-10-11 11:53:13 -04:00 |
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Dannon Baker
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45c53bf9e4
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Force odict usage (sorted by 'order' key in object_store_config) for HierarchicalObjectStore
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2013-10-11 10:56:57 -04:00 |
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Nate Coraor
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a73453f5a7
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Create an HDA delete method for the history contents API.
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2013-10-11 00:21:16 -04:00 |
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Aysam Guerler
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8a3a6a518a
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Add pause option to new upload front end
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2013-10-10 18:23:20 -04:00 |
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Jeremy Goecks
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d8f0f34a97
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Trackster: cleanup for reference track display.
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2013-10-10 18:09:15 -04:00 |
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Martin Cech
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42d0bab54f
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masthead Help menu tweaks
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2013-10-10 17:09:56 -04:00 |
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Aysam Guerler
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c83cd50d45
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Improve upload front end
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2013-10-10 16:55:22 -04:00 |
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Daniel Blankenberg
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57f2ef0844
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One more occurance of fastq_to_fasta that was dropped.
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2013-10-10 16:25:43 -04:00 |
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Dave Bouvier
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667efbd863
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Restore the fastq_to_fasta that was not migrated.
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2013-10-10 16:16:19 -04:00 |
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Dave Bouvier
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8937b1fc60
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Remove migrated tools that were somehow restored to tool_conf.xml.sample
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2013-10-10 16:12:52 -04:00 |
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Nate Coraor
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d022c381a5
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Fix exception class name bug I introduced in the last change to the drmaa runner.
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2013-10-10 15:17:13 -04:00 |
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Aysam Guerler
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efc2365e8c
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Connect upload front end to upload tool via tools api
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2013-10-10 14:41:47 -04:00 |
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Greg Von Kuster
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7de5488c4e
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Filter tool dependency installation to only those that were checked when installing them from the Manage tool dependencies page for an installed tool shed repository.
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2013-10-10 14:11:09 -04:00 |
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Aysam Guerler
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45377c01cf
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Update of the new upload front end, fix data viewer
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2013-10-10 13:34:36 -04:00 |
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Nate Coraor
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607fc002ea
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Fix outdated usage of states in microbial dataset post-job hook.
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2013-10-10 12:53:10 -04:00 |
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Nate Coraor
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705457f218
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Convert DOS line endings.
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2013-10-10 12:48:07 -04:00 |
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John Chilton
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b83f3a7e96
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Backout of c78f3f687fbc. I'm sure it is fine, but @natefoo got in my head and I don't want to break anything.
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2013-10-10 11:16:20 -05:00 |
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Daniel Blankenberg
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61bb975d6c
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Add status code 404 to response in tool_runner when a tool does not exist.
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2013-10-10 11:45:42 -04:00 |
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Daniel Blankenberg
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1f78b99b10
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Remove test/unit/test_tool_loader.pyc added in 10286:edef166c163f.
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2013-10-10 10:58:47 -04:00 |
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Daniel Blankenberg
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f2407f52e3
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Fix for DiskObjectStore Docstring unit test.
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2013-10-10 10:54:34 -04:00 |
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Nate Coraor
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6a99bac16a
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Temporarily remove graph datatypes (necessary to avoid autodetection problems) until their sniffers are fixed. See also: a60d756aeb5d
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2013-10-10 10:42:56 -04:00 |
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Greg Von Kuster
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5ba8370e85
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Fixes and code cleanup for installing tool dependencies defined in tool shed repository definition file via fabric.
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2013-10-10 10:35:37 -04:00 |
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Daniel Blankenberg
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186da8657e
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Add Pythonic FASTQ to FASTA converter back into tool_conf.xml.main removed in 10720:870b10eaa4cf.
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2013-10-10 10:00:13 -04:00 |
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