 John Chilton
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ff011fbe01
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Handle directories with percents in export_remote.xml.
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2025-03-20 16:25:09 -04:00 |
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John Chilton
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16e7818249
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Merge pull request #19849 from ahmedhamidawan/add_spacing_to_workflow_annotation_right_content
[24.2] Add spacing between workflow author and invocation count
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2025-03-19 14:57:56 -04:00 |
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Ahmed Awan
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df2ff299c2
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[24.2] Add spacing between workflow author and invocation count
Fixes https://github.com/galaxyproject/galaxy/issues/19848
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2025-03-19 11:20:47 -05:00 |
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Marius van den Beek
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317f6f0954
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Merge pull request #19844 from jdavcs/24.2_activation_error
[24.2] Try to recover from recurring activation link error
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2025-03-19 08:59:20 +01:00 |
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John Davis
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bb5a6a7b91
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Try to recover from recurring activation link error
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2025-03-18 19:05:43 -04:00 |
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Martin Cech
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993d22167d
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Merge pull request #19836 from dannon/no-wizard-client-route
[24.2] Remove unused client route for standalone wizard interface
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2025-03-18 19:10:03 +01:00 |
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Dannon Baker
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3598a2a014
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Remove unused client route for standalone wizard interface
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2025-03-18 12:22:28 -04:00 |
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Martin Cech
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078979362d
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Merge pull request #19823 from mvdbeek/max_peek_size_50
[24.2] Bump up max_peek_size to 50MB
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2025-03-18 08:51:59 +01:00 |
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John Chilton
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f4692d3c91
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Merge pull request #19820 from mvdbeek/backport_selenium_workflow_editor_fix
[24.2] Backport #19810: Fix workflow param tests not updating param type.
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2025-03-17 12:32:07 -04:00 |
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mvdbeek
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d001584ece
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Bump up max_peek_size to 50MB
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2025-03-17 17:13:22 +01:00 |
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Nicola Soranzo
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27b9293f00
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Merge branch 'release_24.1' into release_24.2
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2025-03-17 11:58:49 +00:00 |
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Nicola Soranzo
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8edced976e
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Merge pull request #19819 from mvdbeek/default_tool_test_timeout
[24.2] Reduce default framework tool test timeout to 60 seconds
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2025-03-17 11:58:00 +00:00 |
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mvdbeek
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a19e4eb091
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Lower pulsar transport_timeout param instead of extending wait
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2025-03-17 10:21:43 +01:00 |
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John Chilton
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3c60f4714b
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Fix workflow param tests not updating param type.
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2025-03-16 22:47:19 +01:00 |
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Nicola Soranzo
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4421f43483
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Store maxseconds on GalaxyTestDriver
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2025-03-16 22:42:58 +01:00 |
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mvdbeek
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02d389f8fe
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Drop size assertions on tabix index
That's none of our business. We know index is valid if the chromosome
names are printed to stdout.
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2025-03-16 21:39:22 +01:00 |
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mvdbeek
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ada691492a
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Extend tool test timeout for pulsar resubmission
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2025-03-16 21:01:23 +01:00 |
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Marius van den BeekandNicola Soranzo
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c732a365e7
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Improve test assertion
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
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2025-03-16 20:51:19 +01:00 |
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mvdbeek
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86d81fe83a
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Fix neostore.zip converter tests
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2025-03-16 15:03:50 +01:00 |
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mvdbeek
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570f6373a2
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Make bgzip a CompressedArchive subclass
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2025-03-16 14:30:03 +01:00 |
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mvdbeek
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e2135d6e16
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Mock unit test doi.org requests
We're testing the cache, not the requests here.
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2025-03-16 13:54:20 +01:00 |
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mvdbeek
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6c3beffa78
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Reduce default framework tool test timeout to 60 seconds
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2025-03-16 12:50:38 +01:00 |
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Marius van den Beek
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dec1beaacf
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Merge pull request #19805 from bernt-matthias/topic/19659-24.1
[24.1] Backport parts of #19659
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2025-03-16 12:00:09 +01:00 |
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mvdbeek
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6a610a1b4b
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Start work on 24.2.4.dev0
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2025-03-16 11:38:12 +01:00 |
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mvdbeek
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f82f1fc5e8
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Create version 24.2.3
v24.2.3
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2025-03-16 11:37:42 +01:00 |
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John Chilton
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808d5f9448
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Merge pull request #19807 from mvdbeek/use_materialized_datasets_in_pulsar
[24.2] Use materialized datasets in pulsar job runner
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2025-03-13 13:48:48 -04:00 |
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Marius van den Beek
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ca61f83ed5
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Merge pull request #19799 from mvdbeek/fix_tool_directory_transfer
[24.2] Fix tool directory pulsar transfer
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2025-03-13 17:58:33 +01:00 |
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mvdbeek
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31aeefd65f
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Use materialized datasets in pulsar
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2025-03-13 17:28:28 +01:00 |
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mvdbeek
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858593a8ba
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Fix transfer of $_TOOL_DIRECTORY subdirectories
Goes together with https://github.com/galaxyproject/pulsar/pull/385
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2025-03-13 16:19:10 +01:00 |
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mvdbeek
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16d4269ce4
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Skip bundles that don't match data table definition
Fixes https://github.com/galaxyproject/galaxy/issues/18749
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2025-03-13 15:17:29 +01:00 |
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Marius van den Beek
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53dec0c554
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Merge pull request #19790 from mvdbeek/fix_converter_linting
[24.2] Fix parameter model constructions with leading underscores, fixes converter linting
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2025-03-12 19:08:58 +01:00 |
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mvdbeek
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773301a679
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Provide explicit inputs
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2025-03-12 12:40:57 +01:00 |
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mvdbeek
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21f1fc9db2
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Use safe field names and alias to handle _ parameter names
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2025-03-12 12:40:56 +01:00 |
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mvdbeek
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ad1591ebc5
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Select new linter classes
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2025-03-12 12:39:06 +01:00 |
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John Davis
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bd75278ef9
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Merge pull request #19679 from jdavcs/24.2_role_name_displayed_name_description
[24.2] Fix private role name performance issue
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2025-03-11 15:03:48 -04:00 |
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John Davis
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b69a736a35
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Fix notifications
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2025-03-11 13:06:52 -04:00 |
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Nicola Soranzo
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cc18d879c4
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Merge pull request #19783 from nsoranzo/release_24.2_prm_format
[24.2] Add rDock prm datatype
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2025-03-11 11:14:37 +00:00 |
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John Davis
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ef092809ab
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Fix groups create/edit permissions
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2025-03-11 00:34:26 -04:00 |
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John Davis
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a03673be98
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Fix append vs add in dataset controller
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2025-03-11 00:34:26 -04:00 |
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John Davis
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5251d94fab
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Ensure user's email is stored in user_context as their private role name
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2025-03-11 00:34:26 -04:00 |
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John Davis
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d128682abc
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Fix dataset manager: serialize_dataset_association_roles
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2025-03-11 00:34:26 -04:00 |
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John Davis
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f5da759245
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Fix api/group_roles::index
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2025-03-11 00:34:26 -04:00 |
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John Davis
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8de7851611
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Fix library_datasets::show_roles()
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2025-03-11 00:34:26 -04:00 |
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John Davis
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5c143ef75a
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Fix controllers/dataset::get_edit
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2025-03-11 00:34:26 -04:00 |
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John Davis
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3c2244bd50
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Fix library_folders::get_permissions()
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2025-03-11 00:34:26 -04:00 |
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John Davis
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3b35f1f58f
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Fix api/users::get_permissions()
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2025-03-11 00:34:26 -04:00 |
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John Davis
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5beeb96f92
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Fix history permissions
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2025-03-11 00:34:26 -04:00 |
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John Davis
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e878d57029
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Fix manage library permissions
Display associated user email as role name for private roles, and role
name for non-private roles.
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2025-03-11 00:34:25 -04:00 |
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John Davis
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e050229fdd
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Add displayed_name to /api/roles endpoint
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2025-03-11 00:34:25 -04:00 |
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John Davis
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104a375ea4
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Add get_private_role_user_emails_dict, test
Retrieves a mapping of private role ids to associated users' emails.
Used to lookup a user's email when generating a displayed_name for
private roles.
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2025-03-11 00:34:22 -04:00 |
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