Nicola Soranzo
d2789add97
Restore docs building
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Broken in commit 42cf61fd36
2019-07-10 16:01:44 +01:00
Marius van den Beek
ef9698895a
Merge pull request #8319 from nsoranzo/lowercase_boolean_yaml
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Use lowercase true/false in config_schema.yml
2019-07-10 11:18:19 +02:00
Marius van den Beek
bc7b48756b
Merge pull request #7402 from guerler/activate_toolshed
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Activate api-based Toolshed interface in Admin panel
2019-07-10 11:06:18 +02:00
Nicola Soranzo
d0c28f669b
Use lowercase true/false in config_schema.yml
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since these are the only allowed values for booleans in YAML 1.2:
https://yaml.org/spec/1.2/spec.html#id2803629
make config-rebuild
2019-07-09 18:58:51 +01:00
Dannon Baker
3072975897
Drop mimeparse docs
2019-07-09 14:14:37 +01:00
Marius van den Beek
d22d7beaf4
Merge pull request #8305 from jmchilton/axe_log_tempfile
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Remove log_tempfile.
2019-07-09 14:42:43 +02:00
guerler
deaa583890
Merge branch 'dev' into activate_toolshed
2019-07-09 13:58:01 +02:00
Dannon Baker
f5f15e2dfc
Drop log_tempfile docs
2019-07-08 20:04:03 -04:00
Dannon Baker
ae11aaa5ec
Drop psyco_full docs
2019-07-08 16:08:20 -04:00
Sergey Golitsynskiy
b5f19e8466
Rerun make updaterst
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First rm doc/source/lib/*, then rerun sphinx. Cleans out obsolete files.
2019-07-06 10:10:56 +02:00
Sergey Golitsynskiy
410f31f271
Merge remote-tracking branch 'upstream/dev' into dev_update_rst
2019-07-06 09:46:04 +02:00
Sergey Golitsynskiy
17beaef624
Update Sphinx RST files for lib/
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Running sphinx 1.8.5 updates all files (one known update: periods are no
longer escaped)
2019-07-05 17:21:31 +02:00
Dannon
72cc063451
Merge pull request #7905 from ValentinMarcon/toolrefs
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Implement "xref" tag on the tool structure (with visualisation)
2019-07-05 09:54:24 -04:00
guerler
d8e089308a
Merge branch 'dev' into activate_toolshed
2019-07-05 14:09:08 +02:00
Sergey Golitsynskiy
6f167a2e8d
Run make config-rebuild to update config/docs
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This is to update galaxy.yml.sample and galaxy_options.rst to be
consistent with the latest update to config_schema.yml (#5651edc)
(generated with make config-rebuild)
2019-06-25 00:18:21 -04:00
ValentinMarcon
94328b9684
merge dev into toolref
2019-06-24 15:03:12 +02:00
John Chilton
344055c4d2
Merge pull request #8098 from jmchilton/tool-util-expand
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Migrate XSD into galaxy-tool-util.
2019-06-12 10:48:59 -04:00
John Chilton
8564eabb43
Merge branch 'release_19.05' into dev
2019-06-10 15:01:42 -04:00
Enis Afgan
9043dd18c6
[19.05] Add recent merges to release notes
2019-06-10 10:31:59 -04:00
Nicola Soranzo
dafe9dd30b
Merge branch 'release_19.05' into dev
2019-06-10 14:15:02 +01:00
Martin Cech
8f5a35e584
I love RST
2019-06-07 15:13:14 -04:00
Martin Cech
0a32933e72
fix link to user release notes
2019-06-05 16:59:46 -04:00
Martin Cech
47fd60fcce
fix link to user release notes
2019-06-05 16:58:53 -04:00
John Chilton
fb7efea6ba
Move tool XSD into galaxy-tool-util package.
2019-06-05 16:46:52 -04:00
Martin Cech
20bdd5867a
Merge branch 'release_19.05' into dev
2019-06-05 16:35:35 -04:00
Martin Cech
5db219b1d2
add 19.05 RN to index
2019-06-05 15:53:05 -04:00
Martin Cech
e8311393e7
minor changes to RN
2019-06-05 15:48:33 -04:00
Enis Afgan
90f56ebc40
Fix link formats for mulled_containers.rst, minor rewording
2019-05-31 15:32:23 -04:00
Helena Rasche
4521614718
Enhance user facing release notes with gifs
2019-05-29 13:03:46 +02:00
John Chilton
aa4566e77e
First pass at writing 19.05 release notes.
2019-05-24 16:59:32 -04:00
John Chilton
0cf83ef345
Initial bootstrapping of 19.05 release notes...
2019-05-24 16:59:32 -04:00
Nicola Soranzo
c82749688e
Merge branch 'release_19.05' into dev
2019-05-11 14:05:55 +01:00
Dannon Baker
349ac80412
Include suggestion from Marius to make port specification more clear.
2019-05-10 10:12:27 -04:00
Dannon Baker
a1487d733a
Fix a few more random typos in config, rebuild
2019-05-10 10:09:10 -04:00
Dannon Baker
6bc802307f
Document the modern docker networking special DNS 'host.docker.internal' for use with GIES. Fix another typo I saw.
2019-05-10 10:04:12 -04:00
Nicola Soranzo
8a2abb867f
Update instructions on conda upgrade
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Reported by @William-Brown .
2019-05-08 18:54:55 +01:00
Dannon Baker
a9b1a0454d
Update documentation for IES
2019-05-08 11:59:16 -04:00
Dannon Baker
fd75ce5e43
Standardize (at least a step forward) access to IES lib via bundle
2019-05-08 10:59:34 -04:00
Dannon Baker
dfa13efe63
Update doc on NodeJS version compatibility (I updated proxy deps a while back, works with modern node now)
2019-05-08 10:25:26 -04:00
Dannon Baker
38c2a80904
Update IES to use bundleEntries-based JS entrypoint to avoid having to ship an extra file; incremental step towards removing require here, too.
2019-05-07 16:44:15 -04:00
John Chilton
f81c41895b
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
Sergey Golitsynskiy
158fb6b454
Update config_schema + run make config-rebuild
2019-04-27 01:19:57 -04:00
guerler
8b8e14976f
Merge branch 'dev' into activate_toolshed
2019-04-18 17:43:30 -04:00
Dannon
e95abd4cbf
Merge pull request #7707 from martenson/plusone-enough
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[PROCEDURES] relax the vote requirement for fixing bugs in releases
2019-04-17 17:15:51 -04:00
John Chilton
12b41507a2
Merge pull request #7706 from martenson/procedure-docs
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[PROCEDURES] exempt notes, changelogs, and packages from mandatory review
2019-04-17 16:11:23 -04:00
Nate Coraor
d1d5944387
Mention cookie_path in the nginx/Apache docs just for anyone who had it
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set and might be confused about why it's no longer documented.
2019-04-16 17:48:36 -04:00
Nate Coraor
fed86eb598
Remove cookie_path configuration documentation since it's now set
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automatically.
2019-04-16 17:48:36 -04:00
Nicola Soranzo
305ca77cc2
Replace `enable_beta_export_format2_default with default_workflow_export_format`
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This allows future different formats to be included.
Also remove promises about next release.
2019-04-15 20:11:26 +01:00
Martin Cech
7de1255670
relax the vote requirement for fixing bugs
2019-04-09 13:52:43 -04:00
Martin Cech
b40ef5ba4c
[PROCEDURES] exempt release notes, changelogs, and packages from mandatory review
2019-04-09 13:49:04 -04:00
Nicola Soranzo