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Author SHA1 Message Date
Helena Rasche e6fb5c85ad rename references to user_email to username 2021-10-06 18:00:52 +02:00
Helena Rasche 602a9d84c2 can it be that easy? 2021-10-06 16:42:47 +02:00
Helena Rasche 959852a49a Change logged-in-as to use username 
We get support requests with emails often, this will decrease how often
users leak their email accidentally in public chat rooms, and will give
us easier instructions for where to find the username.

Also it helps re-inforce the notion of the public username/user profile
which I think more accurately reflects most other modern services. My
username is much more important than my email (which is a largely
private/internal/'implementation detail')
 2021-10-06 13:22:29 +02:00
Björn Grüning cfd99b4cfc Merge pull request #12644 from jmchilton/fix_unit_test_types_1 
Typing fixes for various unit tests.
 2021-10-05 22:19:34 +02:00
John Chilton 8f9034a414 Typing fixes for various unit tests. 2021-10-05 13:22:41 -04:00
David López 69adfb98b1 Merge pull request #12626 from jmchilton/fix_json_selenium 
Fix selenium populators to respect the json parameter.
 2021-10-05 19:12:53 +02:00
John Chilton 5b4e895a01 Merge pull request #12638 from jmchilton/better_model_stores 
Better model store abstractions.
 2021-10-05 11:37:58 -04:00
Nicola Soranzo 97f56c6cc9 Merge branch 'release_21.09' into dev 2021-10-05 13:00:45 +01:00
Nicola Soranzo dbb91a05db Merge branch 'release_21.05' into release_21.09 2021-10-05 12:59:56 +01:00
Marius van den Beek dcad19176b Merge pull request #12632 from nuwang/more_github_action_caching 
Added more caching for github actions which use tox and venv
 2021-10-05 11:50:07 +02:00
Marius van den Beek 6ed8a69bd9 Merge pull request #12636 from jmchilton/more_typing_101 
More typing for API tests (especially test_workflows).
 2021-10-05 10:41:51 +02:00
Dannon 08c8db849e Merge pull request #12630 from dannon/fix-new-user-welcome-styles 
[21.09] Fix new user welcome styles
 2021-10-04 22:45:41 -04:00
Dannon d5ae8b1036 Merge pull request #12627 from guerler/cleanup_vue_mounting 
[21.09] Dispose previously mounted Vue-components in Analysis router
 2021-10-04 22:06:10 -04:00
John Chilton 0660a8e50f More typing for model stores. 2021-10-04 20:37:11 -04:00
John Chilton 75f60c7b69 Rework ObjectImportTracker interaction for reuse in importing invocations... 2021-10-04 20:36:52 -04:00
John Chilton d79794ae7d Serializable abc... 2021-10-04 20:36:40 -04:00
John Chilton 5483a4ffbd Typing in workflows tests... 2021-10-04 20:27:31 -04:00
John Chilton 2770cd0bf4 More typing of API testing. 2021-10-04 20:22:26 -04:00
John Chilton a7939db9a1 Merge pull request #12634 from nsoranzo/release_21.05_followup_12616 
[21.05] Fix id encoding in datasets API `show` method
 2021-10-04 20:19:08 -04:00
guerler 90cba85696 Regular link performs redirect despite pound sign (needs to be checked further, reason unclear) 2021-10-04 18:44:11 -04:00
Nicola Soranzo 6c3a4ad535 Fix id encoding in datasets API show method 
Follow-up on https://github.com/galaxyproject/galaxy/pull/12616
Fix https://github.com/galaxyproject/galaxy/issues/12610

Also:
- Add API test
- Some refactoring in `LibraryPopulator`
- Add `test_` to `ServerDirectoryValidUsageTestCase.link_data_only()`
  method name so it actually gets tested
 2021-10-04 23:19:18 +01:00
guerler ff7c75c172 Add context to event listeners 2021-10-04 16:02:42 -04:00
John Chilton 3a18f09c07 Merge pull request #12633 from mvdbeek/psycopg2_binary_update 
[21.09] Update conditional psycopg2-binary dependency
 2021-10-04 14:13:28 -04:00
guerler dbc4fb2b7a Add component cleanup to analysis router's vue-helper, add cleanup to tool form's history listener 2021-10-04 12:47:36 -04:00
John Chilton b4a8d7a246 Fix selenium populators to respect the json parameter. 
Mirror behavior of the original request calls in the non-Selenium interactor - e.g. https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/tool_util/verify/interactor.py#L747
 2021-10-04 11:31:56 -04:00
mvdbeek 923579401a Update conditional psycopg2-binary dependency 2021-10-04 16:43:30 +02:00
mvdbeek a00acd31d0 Merge branch 'release_21.09' into dev 2021-10-04 16:28:58 +02:00
Marius van den Beek 99c3f581b0 Merge pull request #12621 from mvdbeek/resume_fix 
[21.09] Fix collection replacement and job resuming when re-running single ma…
 2021-10-04 16:26:01 +02:00
Nuwan Goonasekera baf5bc6331 Made venv cache dependent on exact python and os version. 
xref: https://github.com/python-poetry/poetry/pull/1908
xref: https://github.com/actions/setup-python/issues/182
 2021-10-04 19:24:21 +05:30
Nuwan Goonasekera ef2c5a357c Added more caching for github actions using tox and venv 2021-10-04 18:57:08 +05:30
Dannon Baker bff6ee2d61 Fix new user styles to be 1) isolatd, and 2) apply shared scoped style to child components 2021-10-04 09:04:06 -04:00
Nicola Soranzo 92c49b9757 Merge branch 'release_21.09' into dev 2021-10-04 13:44:23 +01:00
Nicola Soranzo 28430bf053 Merge branch 'release_21.05' into release_21.09 2021-10-04 13:39:42 +01:00
mvdbeek a1b263d1fe Test that remapped job output is not visible 2021-10-04 14:23:57 +02:00
mvdbeek b2cf78379d Also skip HDCA hiding via PJA when job fails 2021-10-04 14:23:57 +02:00
mvdbeek b4f09b6efb Hide all job outputs when replacing output element 2021-10-04 14:23:56 +02:00
mvdbeek 77b7012d11 Use collection_type instead of type to define test_data collection type 
It was a TODO and simplifies load_data_dict.
 2021-10-04 14:23:56 +02:00
Dannon 9f90d22044 Merge pull request #12584 from mvdbeek/migrate_to_newer_sentry_client 
[21.09] Use new sentry-sdk and adapt usage pattern
 2021-10-04 08:18:56 -04:00
Marius van den Beek 1610c59e78 Merge pull request #12616 from davelopez/fix_ldda_id_encoding 
[21.05] Fix: encode all ids when returning a `ldda` in datasets API `show` operation
 2021-10-04 12:37:40 +02:00
Marius van den Beek 20811b5757 Merge pull request #12625 from guerler/allow_empty_conditional_value 
[21.09] Allow empty `truevalue` for conditional test parameters
 2021-10-04 12:34:34 +02:00
Marius van den Beek 876088455c Merge pull request #12624 from guerler/fix_pages 
[21.09] Restore overwritten styles
 2021-10-04 09:22:35 +02:00
Marius van den Beek 5fe0bd5b6b Merge pull request #12617 from blankenberg/refgenie_21.09 
[21.09] Refgenie fixes for incompatible configurations
 2021-10-04 09:21:44 +02:00
Marius van den Beek 54df81a4f5 Merge pull request #12545 from mvdbeek/add_david_to_committers 
[PROCEDURES] Add David López to committers group
 2021-10-04 09:15:11 +02:00
Marius van den Beek 9a161cdef5 Merge pull request #12544 from mvdbeek/add_oleg_to_committers 
[PROCEDURES] Add Oleg Zharkov to committers group
 2021-10-04 09:14:56 +02:00
Marius van den Beek f41acc73a6 Merge pull request #12618 from dannon/fix-history-export-link-copy 
[21.09] Fix history export link copy
 2021-10-04 09:12:02 +02:00
mvdbeek 5b7cb2257d Add testcase 2021-10-02 20:27:03 +02:00
guerler c83b893b00 Remove unused test dict attributes 2021-10-02 14:16:53 -04:00
guerler 35cc06cf55 Add values to visit inputs test string 2021-10-02 14:13:33 -04:00
guerler 612ad53565 One more matchcase test case 2021-10-02 14:05:51 -04:00
guerler 19ce83c127 Add additional corner case to form matchcase test 2021-10-02 14:02:02 -04:00