Assunta DeSanto
e06bb0dfae
updated to break validInput into smaller components and make validityErrorMessages more reactive
2021-03-19 14:18:28 -04:00
Assunta DeSanto
77ae7ac125
fixing linting issue
2021-03-18 22:21:56 -04:00
Assunta DeSanto
3d4741f099
adding bullet points for errors
2021-03-18 21:30:43 -04:00
Assunta DeSanto
28590c1842
adding validity error messages to Rule Builder
2021-03-18 18:45:23 -04:00
Nicola Soranzo
ccde3bc237
Merge pull request #11655 from rupertnash/cwltool-relax
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update to cope with impending changes to cwltool internals
2021-03-18 14:27:19 +00:00
Rupert Nash
20e7018b90
update to cope with impending changes to cwltool internals
2021-03-17 19:57:32 +00:00
John Chilton
067d0b2592
Merge pull request #11650 from davelopez/library_folder_contents_api_tests
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Library folder_contents API tests + small fixes
2021-03-17 13:36:40 -04:00
Sergey Golitsynskiy
d2648ab7e2
Merge pull request #11647 from nsoranzo/dont_check_minor_merged_PRs
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Don't check for missing `kind/` label for `minor` merged PRs
2021-03-17 12:10:50 -04:00
Sergey Golitsynskiy
8bdc8c893c
Merge pull request #11649 from nsoranzo/update_dependencies
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Update all Python dependencies
2021-03-17 10:53:29 -04:00
davelopez
1e253d22e6
Fix limit and offset pagination options in folder_contents API
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When using `limit` or `offset` options independently of one another, the pagination was returning all elements instead of applying the corresponding option.
2021-03-17 15:04:45 +01:00
davelopez
e36052d790
Add subfolders to folder_contents API test
2021-03-17 15:04:45 +01:00
davelopez
7ed6f37a91
Fix library folder datasets search_text condition
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If the search_text was matching the name of the dataset but the dataset had no description it was not included in the results.
2021-03-17 15:04:45 +01:00
davelopez
aa708b9f41
Add tests for folder_contents search
2021-03-17 15:04:45 +01:00
davelopez
26695e4e77
Add basic tests for folder_contents API
2021-03-17 15:04:45 +01:00
Nicola Soranzo
8ae5c6c14b
Upload mulled unit test results as artifact in case of failure
2021-03-17 12:42:02 +00:00
Nicola Soranzo
ca3492b26c
Update all Python dependencies
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using `make update-dependencies` .
2021-03-17 12:42:01 +00:00
Nicola Soranzo
76123657c2
Merge branch 'release_21.01' into dev
2021-03-17 12:41:24 +00:00
Nicola Soranzo
b2be0edbc4
Merge pull request #11646 from mvdbeek/fix_warning
2021-03-17 12:29:56 +00:00
mvdbeek
9c2d63211f
Add refgenconf package pin
2021-03-17 12:54:44 +01:00
mvdbeek
2ab396ed63
mypy fix
2021-03-17 12:37:52 +01:00
Sergey Golitsynskiy
7fa062f30c
Pin sqlalchemy in package requirements files
2021-03-17 12:12:35 +01:00
Nicola Soranzo
a8b87120e2
Don't check for missing kind/ label for minor merged PRs
2021-03-17 10:46:52 +00:00
mvdbeek
b3743fbad3
Match environment variable set up by doc building workflow
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Fixes https://github.com/galaxyproject/galaxy/issues/11645
2021-03-17 11:34:25 +01:00
Marius van den Beek
ff18e80022
Merge pull request #11560 from rikeshi/api_jobs_filtering
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Add more filtering options to api/jobs endpoint
2021-03-17 11:14:19 +01:00
Sergey Golitsynskiy
cc130ded95
Merge pull request #11643 from ic4f/dev_starlettecontext_pin
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Set minimum requirements for starlette-context and fastapi
2021-03-17 02:07:44 -04:00
Sergey Golitsynskiy
c3744f0fee
Set minimum version of fastapi
2021-03-17 00:07:37 -04:00
Sergey Golitsynskiy and Nicola Soranzo
667085525c
Specify min python version for starlette-context
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-03-17 00:07:37 -04:00
Sergey Golitsynskiy
776f09990d
Pin min version of starlette-context
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Prevent automatic downgrading by Poetry's dependency resolver
(On 3/15/21 suggested downgrade to 0.1.3)
2021-03-17 00:07:37 -04:00
Nicola Soranzo
1d2671980c
Merge pull request #11619 from ic4f/dev_dependencies
2021-03-17 03:08:40 +00:00
Sergey Golitsynskiy and Nicola Soranzo
1791bc7693
Update lib/galaxy/dependencies/update.sh
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-03-16 22:26:38 -04:00
Sergey Golitsynskiy and Nicola Soranzo
e507a1f6c7
Update lib/galaxy/dependencies/update.sh
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-03-16 22:26:38 -04:00
Sergey Golitsynskiy and Nicola Soranzo
bab73a6cfd
Update lib/galaxy/dependencies/update.sh
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-03-16 22:26:38 -04:00
Sergey Golitsynskiy and Nicola Soranzo
6580a82a25
Update lib/galaxy/dependencies/update.sh
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-03-16 22:26:38 -04:00
Sergey Golitsynskiy
b7ec222897
Install poetry into tmp venv; allow arg for update
2021-03-16 22:26:38 -04:00
Dannon
67d612aad5
Merge pull request #11638 from OlegZharkov/prop-fix
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Fix prop mutation in FolderTopBar
2021-03-16 22:03:55 -04:00
Sergey Golitsynskiy
b0173a382c
Merge pull request #11629 from ic4f/dev_sa_pin
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Pin SQAlchemy to ~1.3.22
2021-03-16 16:10:59 -04:00
mvdbeek
6c74ebd7e7
Merge branch 'release_21.01' into dev
2021-03-16 19:27:15 +01:00
mvdbeek
ef2dfb9f4a
Update version to 21.01
2021-03-16 19:27:14 +01:00
mvdbeek
b4231a9010
Merge branch 'release_21.01' into dev
2021-03-16 19:27:07 +01:00
Dannon
5dac231b4f
Merge pull request #11640 from mvdbeek/release_notes_touchup
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[21.01] Final touchup for the release notes
2021-03-16 14:24:56 -04:00
mvdbeek
7d9d76f346
Final touchup for the release notes
2021-03-16 19:23:35 +01:00
mvdbeek
4e58fcfbde
Merge branch 'release_21.01' into dev
2021-03-16 19:13:50 +01:00
mvdbeek
3ba28b30f7
Merge branch 'release_20.09' into release_21.01
2021-03-16 19:12:25 +01:00
John Chilton
0ac567d6f6
Merge pull request #11626 from mvdbeek/fix_optional_input_set_outputs
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[21.01] Fix optional workflow parameter inputs not recovered when setting step outputs
2021-03-16 14:09:13 -04:00
Dannon
be29cabb58
Merge pull request #11625 from OlegZharkov/collections-fix-21.01
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[21.01] fix exporting datasets from library as collection
2021-03-16 14:04:12 -04:00
Sergey Golitsynskiy
2f0a024915
Pin sqlalchemy in package requirements files
2021-03-16 13:55:21 -04:00
Sergey Golitsynskiy and Nicola Soranzo
0babeebe33
Add comment to dependency pin
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-03-16 13:55:21 -04:00
Sergey Golitsynskiy
8842e289ad
Pin SQAlchemy to ~1.3.22
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1.4 released; our codebase not compatible yet.
2021-03-16 13:55:21 -04:00
Sergey Golitsynskiy
1bbaec2974
Merge pull request #11639 from mvdbeek/bootstrap_script_lint
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Fix linting error in bootstrap script
2021-03-16 13:54:35 -04:00
mvdbeek
8d5c7003ce
Fix linting error in bootstrap script
2021-03-16 18:41:40 +01:00
Assunta DeSanto