mvdbeek
d938357d8e
Update virtualenv
2022-02-11 17:25:50 +01:00
mvdbeek
c90e012fda
Upload coverage results to codecov.io
2022-02-11 17:11:08 +01:00
Marius van den Beek
7ad3c004de
Merge pull request #13348 from mvdbeek/upload_metadata
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Fix for uploading metadata to remote object store
2022-02-10 20:27:59 +01:00
mvdbeek
2aca80d070
Can't change API endpoint parameter, is already used
2022-02-10 18:13:34 +01:00
mvdbeek
d5a46e37b3
Centralize pushing MetadataFile instances in DirectoryModelExportStore
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That means we're pushing the MetadataFile instances also for dynamically
discovered outputs and other advanced patterns.
2022-02-10 15:58:16 +01:00
mvdbeek
c465141ec2
Always update object store
2022-02-10 15:58:16 +01:00
mvdbeek
bab7ec34de
Simplify writing metadata file to object store
2022-02-10 15:58:16 +01:00
mvdbeek
c05028fb37
Don't create a new MetadataFile if we don't need it
2022-02-10 15:58:16 +01:00
mvdbeek
fc493c9280
Add test for storing metadata file in object store
2022-02-10 15:58:16 +01:00
mvdbeek
ac17b66acf
Make metadata_file query parameter mandatory
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It doesn't work without the parameter and results in
```
File "/Users/mvandenb/src/galaxy/lib/galaxy/webapps/galaxy/api/datasets.py", line 264, in get_metadata_file
metadata_file_path, headers = self.service.get_metadata_file(trans, history_content_id, metadata_file)
File "/Users/mvandenb/src/galaxy/lib/galaxy/webapps/galaxy/services/datasets.py", line 448, in get_metadata_file
file_ext = hda.metadata.spec.get(metadata_file).get("file_ext", metadata_file)
AttributeError: 'NoneType' object has no attribute 'get'
```
2022-02-10 15:58:16 +01:00
Uehara.Keizo
fcb68abe1f
Upload metadata files in extended mode
2022-02-10 15:49:55 +01:00
Dannon
b5c7f8408f
Merge pull request #13282 from dannon/client-dependency-updates
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Client dependency updates, swap to node 16.
2022-02-10 07:11:34 -05:00
Nicola Soranzo
b1392b6dd0
Merge pull request #13345 from galaxyproject/dependabot/pip/lib/galaxy/dependencies/tensorflow-2.5.3
2022-02-10 03:30:26 +00:00
Dannon
7046edcd84
Merge pull request #13344 from ahmedhamidawan/UpdateFavIcon_#12622
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Follow Up: Update Favorite Icon Style (Fixes #12622 ) #13332
2022-02-09 22:24:06 -05:00
dependabot[bot]
83a11a4229
Bump tensorflow from 2.5.2 to 2.5.3 in /lib/galaxy/dependencies
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Bumps [tensorflow](https://github.com/tensorflow/tensorflow ) from 2.5.2 to 2.5.3.
- [Release notes](https://github.com/tensorflow/tensorflow/releases )
- [Changelog](https://github.com/tensorflow/tensorflow/blob/master/RELEASE.md )
- [Commits](https://github.com/tensorflow/tensorflow/compare/v2.5.2...v2.5.3 )
---
updated-dependencies:
- dependency-name: tensorflow
dependency-type: direct:production
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Signed-off-by: dependabot[bot] <support@github.com >
2022-02-10 01:19:23 +00:00
aawan
29c21bc766
Follow Up: Update Favorite Icon Style ( Fixes #12622 ) #13332
2022-02-09 16:08:55 -05:00
Dannon
beb43f5473
Merge pull request #13332 from ahmedhamidawan/UpdateFavIcon_#12622
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Update Favorite Icon Style (Fixes #12622 )
2022-02-09 09:14:55 -05:00
aawan
be627e9bb2
Needed to run yarn prettier-check
2022-02-08 23:42:08 -05:00
aawan
f6624ec79e
Removed Custom Styles
2022-02-08 23:27:54 -05:00
aawan
4ae74b82ae
Update Favorite Icon Style ( #12622 ): Colors matched, class/toggle-class modified
2022-02-08 19:32:39 -05:00
Dannon
931d195c8a
Merge pull request #13323 from shenweiyan/patch-5
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Update locale.js
2022-02-07 21:32:59 -05:00
Steven Shum
cbb46f78ac
Update locale.js
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Fix abnormal zh localization.
2022-02-08 10:23:08 +08:00
Dannon Baker
2d272c1c11
Major linkify/linkify-html upgrade (usage changed, separate packages for minimal bundles which is nice)
2022-02-07 19:44:59 -05:00
Dannon Baker
e0d46631d9
Vuex, vuex-cache, vue-multiselect version bumps. Postcss peer dep bump.
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Minor bumps elsewhere.
2022-02-07 19:44:59 -05:00
Dannon Baker
48f7ec8e11
Polyfill assert
2022-02-07 19:44:59 -05:00
Dannon Baker
b48243f515
Util polyfill
2022-02-07 19:44:59 -05:00
Dannon Baker
9fd7376bc5
Querystring-es3 polyfill
2022-02-07 19:44:59 -05:00
Dannon Baker
19c54da423
Drop vue-styleguidist. This has not proved to be useful, breaks
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frequently, and is more trouble than it has proved to be worth.
For a component workbench, we're going to try storybook, which now has a
nice vue integration instead.
Reorg client docs. This all could use a once-over for content and tone.
2022-02-07 19:44:59 -05:00
Dannon Baker
89d25b9241
jquery-ui update (wow), minor sync
2022-02-07 19:44:59 -05:00
Dannon Baker
c7b613ed32
RxJS and related dependency upgrades
2022-02-07 19:44:59 -05:00
Dannon Baker
91177ed775
Citation-js upgrade. This fixes several webpack5 warnings and deprecation notes encountered with 0.5.1
2022-02-07 19:44:59 -05:00
Dannon Baker
e491a244a9
Major sentry release upgrade.
2022-02-07 19:44:59 -05:00
Dannon Baker
bfda3701af
Update circleci base image to match pinned version
2022-02-07 19:44:59 -05:00
Dannon Baker
46b843ea96
Swap from node 14 to node 16 by default. 14 will be maintenance mode through 2023, but 16 is the Active LTS now.
2022-02-07 19:44:59 -05:00
Dannon Baker
7e9ab64daf
Major version upgrade for axios
2022-02-07 19:44:59 -05:00
Dannon Baker
028d4c2ff2
Utilities minor/patch updates
2022-02-07 19:44:59 -05:00
Dannon Baker
eed61e9fe3
Upgrade bootstrap to 4.6.x
2022-02-07 19:44:59 -05:00
Dannon Baker
e3f4def8cf
Update sass/style related dependencies
2022-02-07 19:44:59 -05:00
Dannon Baker
7707141a19
Update chokidar forced resolution
2022-02-07 19:44:59 -05:00
Dannon Baker
6c71f52fec
Drop ua-parser forced resolution (1.x is now out)
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xref https://github.com/galaxyproject/galaxy/pull/12827
2022-02-07 19:44:59 -05:00
Dannon Baker
7ba336e943
We adhere to vue/strongly-recommend as the base now, no longer need this rule
2022-02-07 19:44:59 -05:00
Dannon Baker
ad98a01e88
Incorporate .eslintignore into .eslintrc.json
2022-02-07 19:44:59 -05:00
Dannon Baker
913fdd401a
Convert eslintrc to more standard .json
2022-02-07 19:44:59 -05:00
Dannon Baker
a68da7d9de
Decorate and eslint-silence a place where we currently use two way prop binding (but should refactor)
2022-02-07 19:44:59 -05:00
Dannon Baker
1b8cdcf5aa
FormNumber: fix use of computed value in data(). This would have been uninitialized.
2022-02-07 19:44:59 -05:00
Dannon Baker
0576a52da9
Fix 'style' prop naming in GalaxyLoader (though this is unused currently -- perhaps cut it?)
2022-02-07 19:44:59 -05:00
Dannon Baker
0e5634ff8f
Swap vue/multi-word-component-names to 'warn' instead of error.
2022-02-07 19:44:59 -05:00
Dannon Baker
0606c71301
Eslint swap to @babel/eslint-parser
2022-02-07 19:44:59 -05:00
Dannon Baker
2417858912
Eslint updates (will need followup fix)
2022-02-07 19:44:59 -05:00
Dannon Baker
79e9286893
Upgrade and rerun prettier
2022-02-07 19:44:59 -05:00
mvdbeek