carlfeberhard
d72dd3735c
Client, polyfills: check for sessionStorage using a more cross-browser (apparently) way
2015-12-09 14:10:36 -05:00
Martin Cech
fe1c9dd293
Merge pull request #1251 from jmchilton/workflow_labels_2
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Workflow Editor UI for Step Labels
2015-12-08 12:04:26 -05:00
carlfeberhard
6ba86d89bc
UI, Citations: don't create new BibtexParser, remove debugging
2015-12-08 10:57:41 -05:00
carlfeberhard
5ff09896f7
UI, Citations: fix require of bibtex parser
2015-12-08 10:27:09 -05:00
John Chilton
3f8950628c
Workflow label UI refinement.
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- Escape workflow labels in mako.
- Handle unlabelling steps properly (restore original node name to node and editor form titles).
2015-12-08 09:22:11 +00:00
Martin Cech
ef0b6cc459
show notifications as Toasts and not like JS alerts (bleh)
2015-12-07 15:07:14 -05:00
John Chilton
3a023f4cae
Merge pull request #818 from mvdbeek/cross_toolshed_tool_fetching
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Look up installed tools from different toolshed(s)
2015-12-06 15:56:31 -05:00
John Chilton
e3161b4671
Add support for workflow step labels in editor.
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- If a step has a label, display it in the step editor side panel title.
- Allow clicking the title to change the label.
- Display the label (if set) as the workflow node box title.
- Add icon to workflow node since the title might not be related to type anymore.
- Enforce unique labels accross the workflow in the editor.
- Qunit test cases for some of this behavior and other recent changes.
2015-12-06 12:27:13 +00:00
John Chilton
1fdde2cb4d
Refactor generic side workflow editor panel toward backbone.
2015-12-05 16:37:08 +00:00
Björn Grüning
6126bd0e93
Merge pull request #1214 from jmchilton/format_2_1
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Small enhancements in workflow inputs and outputs
2015-12-05 21:37:50 +01:00
Marius van den Beek
4f1359a0a6
Merge branch 'dev' of github.com:galaxyproject/galaxy into cross_toolshed_tool_fetching
2015-12-05 12:34:37 +01:00
Marius van den Beek
1be4f85404
Add messages inform users of changes in the tool_id.
2015-12-05 12:28:46 +01:00
John Chilton
c91a2eb339
Multi data parameter improvements.
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Allow multiple collections to be fed to a multi data parameter in one reduction step. Fixes #750 and will really simplify certain classes of tools.
Rebased original with fixes for rerun of such reductions.
Manually tested workflow execution and everything seems fine. The workflow editor already thought this was possible, so that is another bug corrected by this enhancement.
To run the associated API test, execute the following command:
./run_tests.sh -with_framework_test_tools -api test/api/test_tools.py:ToolsTestCase.test_reduce_multiple_lists_on_multi_data
Conflicts:
static/maps/mvc/dataset/dataset-choice.js.map
static/maps/mvc/form/form-select-content.js.map
static/scripts/mvc/form/form-select-content.js
2015-12-04 20:41:21 +00:00
John Chilton
cee9d4d1b3
Grunt the workflow JS.
2015-12-04 20:37:35 +00:00
carlfeberhard
9e8068f367
(merge dev)
2015-12-04 13:17:29 -05:00
Eric Rasche
9bd2712c5d
Just going to clobber everything
2015-12-04 11:46:27 -06:00
Eric Rasche
564f12c50f
Remove icons
2015-12-04 11:46:00 -06:00
Eric Rasche
1cc57b1eb2
Add icons and reorganise history menu
2015-12-04 11:46:00 -06:00
carlfeberhard
b72035c9fc
Webpack: fix/re-work the pub-sub connection between the quotameter and the history panel so that the meter updates properly when a new dataset is added
2015-12-03 16:01:18 -05:00
carlfeberhard
002bc6b40a
(merge dev)
2015-12-02 12:00:51 -05:00
Dannon Baker
84464288b1
Merge pull request #1184 from guerler/fix_download_links_002
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Filter download links, avoid warning dialog
2015-12-01 10:19:22 -05:00
Nate Coraor
9e28f2e786
Merge branch 'release_15.10' into dev
2015-11-30 14:13:26 -05:00
guerler
2e97553194
Filter download links
2015-11-28 04:35:58 -05:00
carlfeberhard
9f91b82245
Client: remove IE7/8 and excanvas polyfills
2015-11-24 16:12:31 -05:00
carlfeberhard
d921b42431
Webpack: remove mvc/app
2015-11-24 12:34:09 -05:00
Martin Cech
e19b7f656f
fix the extra slash in URL when creating folder
2015-11-23 15:14:15 -05:00
Martin Cech
e142beaffe
replace wrong class name
2015-11-23 15:08:25 -05:00
guerler
368da171f5
Call onbeforeunload before hiding iframe through display()
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Validated message
2015-11-23 11:12:03 -05:00
carlfeberhard
844facd1f1
UI, Lists: throttle selector animation when number of list items > 20
2015-11-20 14:55:14 -05:00
carlfeberhard
9c5d4cfc0e
(merge dev)
2015-11-20 10:29:23 -05:00
Dannon Baker
f61ec1c3c0
Merge and rebuild client
2015-11-19 20:34:32 -05:00
Dannon Baker
0fdca7d40a
A large assortment of escaping fixes to primarily grids and javascript templating, and one bad-data-ingress fix (copy history name).
2015-11-19 20:27:25 -05:00
guerler
0a09de5453
Show welcome page with required login, remove iframes
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Reinsert iframe for login
Use iframes
2015-11-16 14:47:59 -05:00
carlfeberhard
b8870bfedc
(merge dev)
2015-11-16 10:09:58 -05:00
carlfeberhard
2956b12e9b
Webpack: correct tool menu template loading in requirejs/galaxy.panels.mako by using require.config.map; normalize galaxy_config.root and Galaxy.options.root to Galaxy.root across the templates and js
2015-11-13 18:05:26 -05:00
carlfeberhard
cc6c15f3b1
Webpack: normalize tags, annotations, and tools (change refs - 3 of 3)
2015-11-13 16:28:39 -05:00
carlfeberhard
894af4c5de
Webpack: normalize tags, annotations, and tools (2 of 3)
2015-11-13 16:11:26 -05:00
carlfeberhard
6f754216a4
Webpack: normalize list-panel to list-view
2015-11-13 16:05:52 -05:00
carlfeberhard
55068dea28
Webpack: normalize 'panel' names part-2: history and collection modules
2015-11-12 16:15:49 -05:00
carlfeberhard
c66bc7ab76
Webpack: normalize history and panel module names with other mvc modules (history-panel is not a panel - just a view)
2015-11-12 15:17:32 -05:00
carlfeberhard
6d0ab669ec
Webpack: correctly load jQuery-ui, require bibtex in citations, and move polyfills to first loaded
2015-11-12 15:06:17 -05:00
carlfeberhard
372c2e9e43
Webpack: move data.js into dataset/data.js; pack scripts
2015-11-12 14:52:11 -05:00
carlfeberhard
2f0b646137
Webpack: move tools.js into mvc/tools/
2015-11-12 14:41:45 -05:00
Mark Einon
67d0bcb5b3
Trivial: Replace unnecessary duplicated var check with 'else if'
2015-11-12 15:38:18 +00:00
carlfeberhard
a4edf159be
(merge dev)
2015-11-12 10:04:38 -05:00
carlfeberhard
c1cc3bd483
Webpack: fix masthead in libraries; update Panel usage in base_panels.mako, galaxy.panels.mako
2015-11-12 09:42:29 -05:00
carlfeberhard
b1266b45dc
Webpack: move panel to Backbone, implement ToolPanel and HistoryPanel; simplify js-app.mako (by removing alternate layouts); clean up debugging info, make Galaxy less chatty before logging setup
2015-11-11 17:48:11 -05:00
Marius van den Beek
36797b3195
Add changed static files.
2015-11-10 12:25:01 -05:00
Martin Cech
75d6489348
Merge pull request #1049 from mvdbeek/library_add_from_history
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Fix import of history datasets into library.
2015-11-10 12:22:49 -05:00
Marius van den Beek
4f824cb920
Add changed static files.
2015-11-10 17:37:28 +01:00
carlfeberhard