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Webpack: move panel to Backbone, implement ToolPanel and HistoryPanel; simplify js-app.mako (by removing alternate layouts); clean up debugging info, make Galaxy less chatty before logging setup

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This commit is contained in:
carlfeberhard
2015-11-11 17:48:11 -05:00
parent a639b0c996
commit b1266b45dc
28 changed files with 27541 additions and 209 deletions
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client/galaxy/scripts/apps/analysis.js
+83 -4
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@@ -1,9 +1,88 @@
var App = require( '../mvc/app/app-view' );
var jQuery = require( 'jquery' ),
$ = jQuery,
PANEL = require( 'layout/panel' ),
ToolPanel = require( './tool-panel' ),
HistoryPanel = require( './history-panel' ),
PAGE = require( 'layout/page' ),
ToolsForm = require( 'mvc/tools/tools-form' );
//TODO: this doesn't address multiple apps per page
window.app = function app( options, bootstrapped ){
$( function() {
var app = new App( options.config );
Galaxy.debug( 'building app:', options, bootstrapped );
// .................................................... panels and page
var toolPanel = new ToolPanel({
el : '#left',
userIsAnonymous : Galaxy.user.isAnonymous(),
require_login : options.config.require_login,
spinner_url : options.config.spinner_url,
search_url : options.config.search_url,
toolbox : options.config.toolbox,
toolbox_in_panel: options.config.toolbox_in_panel,
stored_workflow_menu_entries : options.config.stored_workflow_menu_entries,
}),
centerPanel = new PANEL.CenterPanel({
el : '#center'
}),
historyPanel = new HistoryPanel({
el : '#right',
galaxyRoot : Galaxy.root,
userIsAnonymous : Galaxy.user.isAnonymous(),
allow_user_dataset_purge: Galaxy.config.allow_user_dataset_purge,
}),
analysisPage = new PAGE.PageLayoutView( _.extend( options, {
el : 'body',
left : toolPanel,
center : centerPanel,
right : historyPanel,
}));
// .................................................... decorate the galaxy object
// TODO: most of this is becoming unnecessary as we move to apps
Galaxy.page = analysisPage;
// add tool panel to Galaxy object
Galaxy.toolPanel = toolPanel.tool_panel;
Galaxy.upload = toolPanel.uploadButton;
Galaxy.currHistoryPanel = historyPanel.historyView;
Galaxy.currHistoryPanel.connectToQuotaMeter( Galaxy.quotaMeter );
Galaxy.currHistoryPanel.listenToGalaxy( Galaxy );
//HACK: move to router/App
Galaxy.app = {
display : function( view, target ){
// TODO: Remove this line after select2 update
$( '.select2-hidden-accessible' ).remove();
centerPanel.display( view );
},
};
// .................................................... start up
$(function(){
analysisPage.render();
Galaxy.currHistoryPanel.loadCurrentHistory();
// TODO: to router, remove Globals
var params = $.extend( {}, options.config.params );
if( params.tool_id && params.tool_id !== 'upload1' ){
params.id = params.tool_id;
centerPanel.display( new ToolsForm.View( params ) );
} else if( params.job_id ){
params.id = params.tool_id;
centerPanel.display( new ToolsForm.View( params ) );
} else {
var iframeUrl = Galaxy.root;
if( params.workflow_id ){
iframeUrl += 'workflow/run?id=' + params.workflow_id;
} else if( params.m_c ){
iframeUrl += params.m_c + '/' + params.m_a;
} else {
iframeUrl += 'root/welcome';
}
centerPanel.$( '#galaxy_main' ).prop( 'src', iframeUrl );
}
});
};
client/galaxy/scripts/apps/galaxy.js
+1 -1
View File
@@ -1,4 +1,4 @@
//TODO: remove this
var GalaxyApp = require( '../galaxy-app-base' ).GalaxyApp;
window.GalaxyApp = GalaxyApp;
console.debug( 'galaxy.js, GalaxyApp is now in window' );
exports = GalaxyApp;
client/galaxy/scripts/apps/history-panel.js
+83
View File
@@ -0,0 +1,83 @@
var RightPanel = require( 'layout/panel' ).RightPanel,
Ui = require( 'mvc/ui/ui-misc' ),
historyOptionsMenu = require( 'mvc/history/options-menu' );
CurrentHistoryView = require( 'mvc/history/history-panel-edit-current' ).CurrentHistoryPanel;
//TODO: localize
// rename other {history,list}-panels to {history,list}-views
var HistoryPanel = RightPanel.extend({
title : 'History',
initialize : function( options ){
RightPanel.prototype.initialize.call( this, options );
var self = this;
// this button re-fetches the history and contents and re-renders the history panel
this.refreshButton = new Ui.ButtonLink({
id : 'history-refresh-button',
title : 'Refresh history',
cls : 'panel-header-button',
icon : 'fa fa-refresh',
onclick : function() {
self.historyView.loadCurrentHistory();
}
});
// opens a drop down menu with history related functions (like view all, delete, share, etc.)
this.optionsButton = new Ui.ButtonLink({
id : 'history-options-button',
title : 'History options',
cls : 'panel-header-button',
icon : 'fa fa-cog',
});
// goes to a page showing all the users histories in panel form (for logged in users)
this.viewMultiButton = null;
if( !options.userIsAnonymous ){
this.viewMultiButton = new Ui.ButtonLink({
id : 'history-view-multi-button',
title : 'View all histories',
cls : 'panel-header-button',
icon : 'fa fa-columns',
href : options.galaxyRoot + 'history/view_multiple'
});
}
// build history options menu
this.optionsMenu = historyOptionsMenu( this.optionsButton.$el, {
anonymous : options.userIsAnonymous,
purgeAllowed : options.allow_user_dataset_purge,
root : options.galaxyRoot
});
// view of the current history
this.historyView = new CurrentHistoryView({
purgeAllowed : options.allow_user_dataset_purge,
linkTarget : 'galaxy_main',
$scrollContainer: function(){ return this.$el.parent(); }
});
},
render : function(){
RightPanel.prototype.render.call( this );
this.debug( 'rendering:' );
this.$( '.panel-header-buttons' ).append([
this.refreshButton.$el,
this.optionsButton.$el,
this.viewMultiButton? this.viewMultiButton.$el : null,
]);
this.historyView.setElement( this.$( '.history-panel' ) );
},
/** panel dom template. id is 'right' or 'left' */
_templateBody : function( data ){
return [
'<div class="unified-panel-body unified-panel-body-background">',
'<div id="current-history-panel" class="history-panel"/>',
'</div>'
].join('');
},
toString : function(){ return 'HistoryPanel'; }
});
module.exports = HistoryPanel;
client/galaxy/scripts/apps/tool-panel.js
+108
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@@ -0,0 +1,108 @@
var LeftPanel = require( 'layout/panel' ).LeftPanel,
Tools = require( 'mvc/tools' ),
Upload = require( 'mvc/upload/upload-view' );
//TODO: localize
/* Builds the tool panel on the left */
var ToolPanel = LeftPanel.extend({
title : 'Tools',
initialize: function( options ){
LeftPanel.prototype.initialize.call( this, options );
this.log( this + '.initialize:', options );
this.stored_workflow_menu_entries = options.stored_workflow_menu_entries || [];
// TODO: this switch doesn't belong here?
if( options.userIsAnonymous || !options.require_login ){
// create tool search, tool panel, and tool panel view.
var tool_search = new Tools.ToolSearch({
spinner_url : options.spinner_url,
search_url : options.search_url,
hidden : false
});
var tools = new Tools.ToolCollection( options.toolbox );
this.tool_panel = new Tools.ToolPanel({
tool_search : tool_search,
tools : tools,
layout : options.toolbox_in_panel
});
this.tool_panel_view = new Tools.ToolPanelView({ model: this.tool_panel });
// add upload plugin
this.uploadButton = new Upload( options );
}
},
render : function(){
var self = this;
LeftPanel.prototype.render.call( self );
self.$( '.panel-header-buttons' ).append( self.uploadButton.$el );
// if there are tools, render panel and display everything
if (self.tool_panel.get( 'layout' ).size() > 0) {
self.tool_panel_view.render();
//TODO: why the hide/show?
self.$( '.toolMenu' ).show();
}
self.$( '.toolMenuContainer' ).prepend( self.tool_panel_view.$el );
self._renderWorkflowMenu();
// if a tool link has the minsizehint attribute, handle it here (gen. by hiding the tool panel)
self.$( 'a[minsizehint]' ).click( function() {
if ( parent.handle_minwidth_hint ) {
parent.handle_minwidth_hint( $( self ).attr( 'minsizehint' ) );
}
});
},
_renderWorkflowMenu : function(){
var self = this;
// add internal workflow list
self.$( '#internal-workflows' ).append( self._templateTool({
title : 'All workflows',
href : 'workflow/list_for_run'
}));
_.each( self.stored_workflow_menu_entries, function( menu_entry ){
self.$( '#internal-workflows' ).append( self._templateTool({
title : menu_entry.stored_workflow.name,
href : 'workflow/run?id=' + menu_entry.encoded_stored_workflow_id
}));
});
},
_templateTool: function( tool ) {
return [
'<div class="toolTitle">',
// global
'<a href="', Galaxy.root, tool.href, '" target="galaxy_main">', tool.title, '</a>',
'</div>'
].join('');
},
_templateBody : function(){
return [
'<div class="unified-panel-body unified-panel-body-background">',
'<div class="toolMenuContainer">',
'<div class="toolMenu" style="display: none">',
'<div id="search-no-results" style="display: none; padding-top: 5px">',
'<em><strong>Search did not match any tools.</strong></em>',
'</div>',
'</div>',
'<div class="toolSectionPad"/>',
'<div class="toolSectionPad"/>',
'<div class="toolSectionTitle" id="title_XXinternalXXworkflow">',
'<span>Workflows</span>',
'</div>',
'<div id="internal-workflows" class="toolSectionBody">',
'<div class="toolSectionBg"/>',
'</div>',
'</div>',
'</div>'
].join('');
},
toString : function(){ return 'ToolPanel'; }
});
module.exports = ToolPanel;
client/galaxy/scripts/galaxy-app-base.js
+6 -9
View File
@@ -19,7 +19,6 @@ define([
* user : the current user (as a mvc/user/user-model)
*/
function GalaxyApp( options, bootstrapped ){
console.debug( 'GalaxyApp:', options, bootstrapped );
var self = this;
return self._init( options || {}, bootstrapped || {} );
}
@@ -43,19 +42,20 @@ GalaxyApp.prototype._init = function __init( options, bootstrapped ){
_.extend( self, Backbone.Events );
if( localDebugging ){
self.logger = console;
console.debug( 'debugging galaxy:', 'options:', options, 'bootstrapped:', bootstrapped );
}
self._processOptions( options );
self.debug( 'GalaxyApp.options: ', self.options );
// special case for root
self.root = options.root || '/';
self._initConfig( options.config || bootstrapped.config || {} );
self.debug( 'GalaxyApp.config: ', self.config );
self._patchGalaxy( window.Galaxy );
self._initLogger( self.options.loggerOptions || {} );
// at this point, either logging or not and namespaces are enabled - chat it up
self.debug( 'GalaxyApp.options: ', self.options );
self.debug( 'GalaxyApp.config: ', self.config );
self.debug( 'GalaxyApp.logger: ', self.logger );
self._initLocale();
@@ -86,7 +86,6 @@ GalaxyApp.prototype.defaultOptions = {
GalaxyApp.prototype._processOptions = function _processOptions( options ){
var self = this,
defaults = self.defaultOptions;
self.debug( '_processOptions: ', options );
self.options = {};
for( var k in defaults ){
@@ -100,7 +99,6 @@ GalaxyApp.prototype._processOptions = function _processOptions( options ){
/** parse the config and any extra info derived from it */
GalaxyApp.prototype._initConfig = function _initConfig( config ){
var self = this;
self.debug( '_initConfig: ', config );
self.config = config;
// give precendence to localdebugging for this setting
@@ -114,12 +112,12 @@ GalaxyApp.prototype._patchGalaxy = function _patchGalaxy( patchWith ){
var self = this;
// in case req or plain script tag order has created a prev. version of the Galaxy obj...
if( self.options.patchExisting && patchWith ){
self.debug( 'found existing Galaxy object:', patchWith );
// self.debug( 'found existing Galaxy object:', patchWith );
// ...(for now) monkey patch any added attributes that the previous Galaxy may have had
//TODO: move those attributes to more formal assignment in GalaxyApp
for( var k in patchWith ){
if( patchWith.hasOwnProperty( k ) ){
self.debug( '\t patching in ' + k + ' to Galaxy' );
// self.debug( '\t patching in ' + k + ' to Galaxy:', self[ k ] );
self[ k ] = patchWith[ k ];
}
}
@@ -138,7 +136,6 @@ GalaxyApp.prototype._initLogger = function _initLogger( loggerOptions ){
loggerOptions.consoleNamespaceWhitelist = localStorage.getItem( NAMESPACE_KEY ).split( ',' );
} catch( storageErr ){}
}
self.debug( '_initLogger:', loggerOptions );
self.logger = new metricsLogger.MetricsLogger( loggerOptions );
if( self.config.debug ){
client/galaxy/scripts/layout/page.js
+149
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@@ -0,0 +1,149 @@
define([
'layout/masthead',
'layout/panel',
'mvc/ui/ui-modal',
'mvc/base-mvc'
], function( MASTHEAD, PANEL, MODAL, BASE_MVC ) {
// ============================================================================
var PageLayoutView = Backbone.View.extend( BASE_MVC.LoggableMixin ).extend({
_logNamespace : 'layout',
el : 'body',
className : 'full-content',
_panelIds : [
'left', 'center', 'right'
],
defaultOptions : {
message_box_visible : false,
message_box_content : '',
message_box_class : 'info',
show_inactivity_warning : false,
inactivity_box_content : '',
},
initialize : function( options ){
this.log( this + '.initialize:', options );
_.extend( this, _.pick( options, this._panelIds ) );
this.options = _.defaults( _.omit( options, this._panelIds ), this.defaultOptions );
},
/** */
$everything : function(){
return this.$( '#everything' );
},
render : function(){
this.log( this + '.render:' );
this.$el.attr( 'scroll', 'no' );
this.$el.html( this.template( this.options ) );
this.modal = new MODAL.View();
//TODO: no render on masthead, needs init each time
this.masthead = new MASTHEAD.GalaxyMasthead( this.options.config );
// TODO: remove globals
Galaxy.modal = this.modal;
Galaxy.masthead = this.masthead;
if( this.options.message_box_visible ){
this.messageBox( this.options.message_box_content, this.options.message_box_class );
}
if( this.options.show_inactivity_warning ){
this.inactivityWarning( this.options.inactivity_box_content );
}
this.renderPanels();
return this;
},
/** */
messageBox : function( content, level ){
content = content || '';
level = level || 'info';
this.$el.addClass( 'has-message-box' );
this.$( '#messagebox' )
.attr( 'class', 'panel-' + level + '-message' )
.html( content )
.toggle( !!content );
return this;
},
/** */
inactivityWarning : function( content ){
var verificationLink = '<a href="' + Galaxy.root + 'user/resend_verification">Resend verification.</a>';
this.$el.addClass( 'has-inactivity-box' );
this.$( '#inactivebox' )
.html( content )
.append( ' ' + verificationLink )
.toggle( !!content );
return this;
},
/** */
renderPanels : function(){
var page = this;
// TODO: Remove this line after select2 update
$( '.select2-hidden-accessible' ).remove();
this._panelIds.forEach( function( panelId ){
if( _.has( page, panelId ) ){
var panelView = page[ panelId ];
panelView.setElement( '#' + panelId );
panelView.render();
}
});
return this;
},
/** body template */
//TODO: to underscore
template: function( options ){
//TODO: remove inline styling
return [
'<div id="everything" style="position: absolute; top: 0; left: 0; width: 100%; height: 100%;">',
'<div id="background"/>',
'<div id="messagebox" style="display: none;"></div>',
'<div id="inactivebox" class="panel-warning-message" style="display: none;"></div>',
// content here
// TODO: wrapping div
this.left? '<div id="left"/>' : '',
this.center? '<div id="center" class="inbound"/>' : '',
this.right? '<div id="right"/>' : '',
'</div>',
// a dropdown overlay for capturing clicks/drags
'<div id="DD-helper" style="display: none;"></div>',
// display message when js is disabled
'<noscript>',
'<div class="overlay overlay-background noscript-overlay">',
'<div>',
'<h3 class="title">Javascript Required for Galaxy</h3>',
'<div>',
'The Galaxy analysis interface requires a browser with Javascript enabled.<br>',
'Please enable Javascript and refresh this page',
'</div>',
'</div>',
'</div>',
'</noscript>'
].join('');
},
hideSidePanels : function(){
if( this.left ){
this.left.hide();
}
if( this.right ){
this.right.hide();
}
},
toString : function(){ return 'PageLayoutView'; }
});
// ============================================================================
return {
PageLayoutView: PageLayoutView
};
});
client/galaxy/scripts/layout/panel.js
+252 -103
View File
@@ -1,137 +1,286 @@
define([
'jquery',
], function( jQuery ){
'libs/underscore',
'libs/backbone',
'mvc/base-mvc',
], function( jQuery, _, Backbone, BASE_MVC ){
"use strict";
// ============================================================================
var $ = jQuery;
// Panels
var MIN_PANEL_WIDTH = 160,
MAX_PANEL_WIDTH = 800;
/** */
var Panel = function( options ) {
this.$panel = options.panel;
this.$center = options.center;
this.$drag = options.drag;
this.$toggle = options.toggle;
this.left = !options.right;
this.hidden = false;
this.hidden_by_tool = false;
this.saved_size = null;
this.init();
};
// ----------------------------------------------------------------------------
/**
*
*/
var SidePanel = Backbone.View.extend( BASE_MVC.LoggableMixin ).extend({
_logNamespace : 'layout',
$.extend( Panel.prototype, {
initialize: function( attributes ){
this.log( this + '.initialize:', attributes );
this.title = attributes.title || this.title || '';
/** */
resize: function( x ) {
this.$panel.css( "width", x );
if ( this.left ) {
this.$center.css( "left", x );
} else {
this.$center.css( "right", x );
}
// ie7-recalc.js
if ( document.recalc ) { document.recalc(); }
this.hidden = false;
this.savedSize = null;
this.hiddenByTool = false;
},
/** */
do_toggle: function() {
var self = this;
if ( this.hidden ) {
this.$toggle.removeClass( "hidden" );
if ( this.left ) {
this.$panel.css( "left", - this.saved_size ).show().animate( { "left": 0 }, "fast", function () {
self.resize( self.saved_size );
});
} else {
this.$panel.css( "right", - this.saved_size ).show().animate( { "right": 0 }, "fast", function () {
self.resize( self.saved_size );
});
}
self.hidden = false;
} else {
self.saved_size = this.$panel.width();
if ( document.recalc ) { document.recalc(); }
// Hide border
if ( this.left ) {
this.$panel.animate( { left: - this.saved_size }, "fast" );
} else {
this.$panel.animate( { right: - this.saved_size }, "fast" );
}
// self.resize(0);
if ( this.left ) {
this.$center.css( "left", 0 );
} else {
this.$center.css( "right", 0 );
}
self.hidden = true;
self.$toggle.addClass( "hidden" );
}
this.hidden_by_tool = false;
$center : function(){
return this.$el.siblings( '#center' );
},
/** */
handle_minwidth_hint: function( x ) {
var space = this.$center.width() - ( this.hidden ? this.saved_size : 0 );
if ( space < x )
{
if ( ! this.hidden ) {
this.do_toggle();
this.hidden_by_tool = true;
}
} else {
if ( this.hidden_by_tool ) {
this.do_toggle();
this.hidden_by_tool = false;
}
}
$toggleButton : function(){
return this.$( '.unified-panel-footer > .panel-collapse' );
},
/** */
force_panel: function( op ) {
if ( ( this.hidden && op == 'show' ) || ( ! this.hidden && op == 'hide' ) ) {
this.do_toggle();
}
render: function(){
this.log( this + '.render:' );
this.$el.html( this.template( this.id ) );
},
/** */
init: function() {
/** panel dom template. id is 'right' or 'left' */
template: function(){
return [
this._templateHeader(),
this._templateBody(),
this._templateFooter(),
].join('');
},
/** panel dom template. id is 'right' or 'left' */
_templateHeader: function( data ){
return [
'<div class="unified-panel-header" unselectable="on">',
'<div class="unified-panel-header-inner">',
'<div class="panel-header-buttons" style="float: right"/>',
'<div class="panel-header-text">', _.escape( this.title ), '</div>',
'</div>',
'</div>',
].join('');
},
/** panel dom template. id is 'right' or 'left' */
_templateBody: function( data ){
return '<div class="unified-panel-body"/>';
},
/** panel dom template. id is 'right' or 'left' */
_templateFooter: function( data ){
return [
'<div class="unified-panel-footer">',
'<div class="panel-collapse ', _.escape( this.id ), '"/>',
'<div class="drag"/>',
'</div>',
].join('');
},
// ..............................................................
events : {
'mousedown .unified-panel-footer > .drag' : '_mousedownDragHandler',
'click .unified-panel-footer > .panel-collapse' : 'toggle'
},
_mousedownDragHandler : function( ev ){
var self = this,
prevX;
// Pull the collapse element out to body level so it is visible when panel is hidden
self.$toggle.remove().appendTo( "body" );
// Hide/show using toggle element
self.$toggle.on( "click", function() { self.do_toggle(); } );
draggingLeft = this.id === 'left',
prevX = ev.pageX;
// Resizing using drag element
function move( e ){
var delta = e.pageX - prevX;
prevX = e.pageX;
var oldWidth = self.$panel.width(),
newWidth = ( self.left )?( oldWidth + delta ):( oldWidth - delta );
var oldWidth = self.$el.width(),
newWidth = draggingLeft?( oldWidth + delta ):( oldWidth - delta );
// Limit range
newWidth = Math.min( MAX_PANEL_WIDTH, Math.max( MIN_PANEL_WIDTH, newWidth ) );
self.resize( newWidth );
}
this.$drag.on( "mousedown", function( e ) {
prevX = e.pageX;
$( '#DD-helper' ).show()
.on( 'mousemove', move )
.one( 'mouseup', function( e ){
$( this ).hide().off( 'mousemove', move );
});
});
// TODO: remove global
window.force_left_panel = function( x ) { self.force_panel( x ); };
window.handle_minwidth_hint = function( x ) { self.handle_minwidth_hint( x ); };
}
// this is a page wide overlay that assists in capturing the move and release of the mouse
// if not provided, progress and end wouldn't fire if the mouse moved out of the drag button area
$( '#DD-helper' )
.show()
.on( 'mousemove', move )
.one( 'mouseup', function( e ){
$( this ).hide().off( 'mousemove', move );
});
},
//TODO: the following three could be simplified I think
resize : function( newSize ){
this.$el.css( 'width', newSize );
// if panel is 'right' (this.id), move center right newSize number of pixels
this.$center().css( this.id, newSize );
return self;
},
show : function(){
if( !this.hidden ){ return; }
var self = this,
animation = {},
whichSide = this.id;
animation[ whichSide ] = 0;
self.$el
.css( whichSide, -this.savedSize )
.show()
.animate( animation, "fast", function(){
self.resize( self.savedSize );
});
self.hidden = false;
self.$toggleButton().removeClass( "hidden" );
return self;
},
hide : function(){
console.debug( 'hide:', this, this.hidden );
if( this.hidden ){ return; }
var self = this,
animation = {},
whichSide = this.id;
self.savedSize = this.$el.width();
animation[ whichSide ] = -this.savedSize;
this.$el.animate( animation, "fast" );
this.$center().css( whichSide, 0 );
self.hidden = true;
self.$toggleButton().addClass( "hidden" );
return self;
},
toggle: function( ev ){
var self = this;
if( self.hidden ){
self.show();
} else {
self.hide();
}
self.hiddenByTool = false;
return self;
},
// ..............................................................
//TODO: only used in message.mako?
/** */
handle_minwidth_hint: function( hint ){
console.debug( 'handle_minwidth_hint:', hint );
var space = this.$center().width() - ( this.hidden ? this.savedSize : 0 );
if( space < hint ){
if( !this.hidden ){
this.toggle();
this.hiddenByTool = true;
}
} else {
if( this.hiddenByTool ){
this.toggle();
this.hiddenByTool = false;
}
}
return self;
},
/** */
force_panel : function( op ){
console.debug( 'force_panel:', op );
if( op == 'show' ){ return this.show(); }
if( op == 'hide' ){ return this.hide(); }
return self;
},
toString : function(){ return 'SidePanel(' + this.id + ')'; }
});
// ----------------------------------------------------------------------------
// TODO: side should be defined by page - not here
var LeftPanel = SidePanel.extend({
id : 'left',
});
var RightPanel = SidePanel.extend({
id : 'right',
});
// ----------------------------------------------------------------------------
/**
*
*/
var CenterPanel = Backbone.View.extend( BASE_MVC.LoggableMixin ).extend({
_logNamespace : 'layout',
initialize : function( options ){
this.log( this + '.initialize:', options );
/** previous view contained in the center panel - cached for removal later */
this.prev = null;
},
render : function(){
this.log( this + '.render:' );
this.$el.html( this.template() );
// ?: doesn't work/listen in events map
this.$( '#galaxy_main' ).on( 'load', _.bind( this._iframeChangeHandler, this ) );
},
/** */
_iframeChangeHandler : function( ev ){
var iframe = ev.currentTarget;
var location = iframe.contentWindow && iframe.contentWindow.location;
if( location && location.host ){
// show the iframe and hide MVCview div, remove any views in the MVCview div
$( iframe ).show();
if( this.prev ){
this.prev.remove();
}
this.$( '#center-panel' ).hide();
// TODO: move to Galaxy
Galaxy.trigger( 'galaxy_main:load', {
fullpath: location.pathname + location.search + location.hash,
pathname: location.pathname,
search : location.search,
hash : location.hash
});
this.trigger( 'galaxy_main:load', location );
}
},
/** */
display: function( view ){
// we need to display an MVC view: hide the iframe and show the other center panel
// remove any previous views
if( this.prev ){
this.prev.remove();
}
this.prev = view;
this.$( '#galaxy_main' ).hide();
this.$( '#center-panel' ).scrollTop( 0 ).append( view.$el ).show();
this.trigger( 'center-panel:load', view );
},
template: function(){
return [
//TODO: remove inline styling
'<div style="position: absolute; width: 100%; height: 100%">',
'<iframe name="galaxy_main" id="galaxy_main" frameborder="0" ',
'style="position: absolute; width: 100%; height: 100%;"/>',
'<div id="center-panel" ',
'style="display: none; position: absolute; width: 100%; height: 100%; padding: 10px; overflow: auto;"/>',
'</div>'
].join('');
},
toString : function(){ return 'CenterPanel'; }
});
// ============================================================================
return Panel;
return {
LeftPanel : LeftPanel,
RightPanel : RightPanel,
CenterPanel : CenterPanel
};
});
client/galaxy/scripts/mvc/tools.js
-1
View File
@@ -12,7 +12,6 @@
"templates/compiled/panel_section",
"templates/compiled/tool_search",
], function(_, util, data, ToolsForm, tool_form, tool_link, panel_section, tool_search) {
console.debug( tool_form, tool_link, panel_section, tool_search );
// TODO: certainly not the way to do this
var _templates = {
client/galaxy/scripts/onload.js
+3 -4
View File
@@ -9,17 +9,17 @@ window.$ = jQuery;
window._ = _;
window.Backbone = Backbone;
window.Handlebars = Handlebars;
console.debug('globals loaded:', window.jQuery, window.Backbone, '...');
// console.debug('globals loaded:', window.jQuery, window.Backbone, '...');
// these are galaxy globals not defined in the provider (although they could be - but why encourage that?)
window.Panel = require( 'panel' );
window.panels = require( 'layout/panel' );
_.extend( window, require( 'modal' ) );
window.async_save_text = require( 'utils/async-save-text' );
var POPUPMENU = require( 'ui/popupmenu' );
window.make_popupmenu = POPUPMENU.make_popupmenu;
window.make_popup_menus = POPUPMENU.make_popup_menus;
window.init_tag_click_function = require( 'ui/autocom_tagging' );
console.debug( 'galaxy globals loaded:', window.Panel);
// console.debug( 'galaxy globals loaded' );
// ============================================================================
// jquery on document ready
@@ -129,7 +129,6 @@ $(document).ready( function() {
// Masthead dropdown menus
var $dropdowns = $("#masthead ul.nav > li.dropdown > .dropdown-menu");
console.debug( 'what?', $dropdowns );
$("body").on( "click.nav_popups", function( e ) {
$dropdowns.hide();
$("#DD-helper").hide();
client/webpack.config.js
+2 -1
View File
@@ -9,6 +9,7 @@ var webpack = require( 'webpack' ),
// jquery et al
'jquery',
'libs/jquery/jquery.migrate',
// jquery plugins
'libs/jquery/select2',
'libs/jquery/jquery.event.hover',
'libs/jquery/jquery.form',
@@ -21,9 +22,9 @@ var webpack = require( 'webpack' ),
'libs/handlebars.runtime',
// all pages get these
'polyfills',
'layout/panel',
'modal',
'ui/autocom_tagging',
'layout/panel',
'onload',
];
lib/galaxy/webapps/galaxy/controllers/root.py
+1 -2
View File
@@ -78,8 +78,7 @@ class RootController( controller.JSAppLauncher, UsesAnnotations ):
config = js_options[ 'config' ]
config.update( self._get_extended_config( trans ) )
return self.template( trans, 'analysis', options=js_options )
# return self.template( trans, 'analysis', options=js_options, panels=[ 'left', 'center', 'right' ])
return self.template( trans, 'analysis', options=js_options, panels=[ 'left', 'center', 'right' ])
# @web.expose
# def index(self, trans, id=None, tool_id=None, mode=None, workflow_id=None, history_id=None, m_c=None, m_a=None, **kwd):
static/maps/galaxy-app-base.js.map
+1 -1
View File
@@ -1 +1 @@
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static/maps/layout/page.js.map
+1
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static/scripts/bundled/analysis.bundled.js
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static/scripts/bundled/analysis.bundled.js.map
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static/scripts/bundled/galaxy.bundled.js
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static/scripts/galaxy-app-base.js
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define(["libs/underscore","libs/backbone","mvc/base-mvc","mvc/user/user-model","utils/metrics-logger","utils/add-logging","utils/localization"],function(a,b,c,d,e,f,g){function h(a,b){console.debug("GalaxyApp:",a,b);var c=this;return c._init(a||{},b||{})}f(h,"GalaxyApp");var i="galaxy:debug",j=i+":namespaces",k=!1;try{k="true"==localStorage.getItem(i)}catch(l){console.log(g("localStorage not available for debug flag retrieval"))}return h.prototype._init=function(c,d){var e=this;return a.extend(e,b.Events),k&&(e.logger=console),e._processOptions(c),e.debug("GalaxyApp.options: ",e.options),e.root=c.root||"/",e._initConfig(c.config||d.config||{}),e.debug("GalaxyApp.config: ",e.config),e._patchGalaxy(window.Galaxy),e._initLogger(e.options.loggerOptions||{}),e.debug("GalaxyApp.logger: ",e.logger),e._initLocale(),e.debug("GalaxyApp.localize: ",e.localize),e.config=c.config||{},e.debug("GalaxyApp.config: ",e.config),e._initUser(c.user||{}),e.debug("GalaxyApp.user: ",e.user),e._setUpListeners(),e.trigger("ready",e),e},h.prototype.defaultOptions={patchExisting:!0,root:"/"},h.prototype._processOptions=function(a){var b=this,c=b.defaultOptions;b.debug("_processOptions: ",a),b.options={};for(var d in c)c.hasOwnProperty(d)&&(b.options[d]=a.hasOwnProperty(d)?a[d]:c[d]);return b},h.prototype._initConfig=function(a){var b=this;return b.debug("_initConfig: ",a),b.config=a,b.config.debug=k||b.config.debug,b},h.prototype._patchGalaxy=function(a){var b=this;if(b.options.patchExisting&&a){b.debug("found existing Galaxy object:",a);for(var c in a)a.hasOwnProperty(c)&&(b.debug(" patching in "+c+" to Galaxy"),b[c]=a[c])}},h.prototype._initLogger=function(a){var b=this;if(b.config.debug){a.consoleLogger=a.consoleLogger||console,a.consoleLevel=a.consoleLevel||e.MetricsLogger.ALL;try{a.consoleNamespaceWhitelist=localStorage.getItem(j).split(",")}catch(d){}}return b.debug("_initLogger:",a),b.logger=new e.MetricsLogger(a),b.config.debug&&(c.LoggableMixin.logger=b.logger),b},h.prototype._initLocale=function(a){var b=this;return b.debug("_initLocale:",a),b.localize=g,window._l=b.localize,b},h.prototype._initUser=function(a){var b=this;return b.debug("_initUser:",a),b.user=new d.User(a),b.user.logger=b.logger,b.currUser=b.user,b},h.prototype._setUpListeners=function(){var a=this;return a.lastAjax={},$(document).bind("ajaxSend",function(b,c,d){var e=d.data;try{e=JSON.parse(e)}catch(f){}a.lastAjax={url:location.href.slice(0,-1)+d.url,data:e}}),a},h.prototype.debugging=function(a){var b=this;try{if(void 0===a)return"true"===localStorage.getItem(i);if(a)return localStorage.setItem(i,!0),!0;localStorage.removeItem(i),b.debuggingNamespaces(null)}catch(c){console.log(g("localStorage not available for debug flag retrieval"))}return!1},h.prototype.debuggingNamespaces=function(a){var b=this;try{if(void 0===a){var c=localStorage.getItem(j);return"string"==typeof c?c.split(","):[]}null===a?localStorage.removeItem(j):localStorage.setItem(j,a);var d=b.debuggingNamespaces();return b.logger&&(b.logger.options.consoleNamespaceWhitelist=d),d}catch(e){console.log(g("localStorage not available for debug namespace retrieval"))}},h.prototype.toString=function(){var a=this.user?this.user.get("email")||"(anonymous)":"uninitialized";return"GalaxyApp("+a+")"},{GalaxyApp:h}});
define(["libs/underscore","libs/backbone","mvc/base-mvc","mvc/user/user-model","utils/metrics-logger","utils/add-logging","utils/localization"],function(a,b,c,d,e,f,g){function h(a,b){var c=this;return c._init(a||{},b||{})}f(h,"GalaxyApp");var i="galaxy:debug",j=i+":namespaces",k=!1;try{k="true"==localStorage.getItem(i)}catch(l){console.log(g("localStorage not available for debug flag retrieval"))}return h.prototype._init=function(c,d){var e=this;return a.extend(e,b.Events),k&&(e.logger=console,console.debug("debugging galaxy:","options:",c,"bootstrapped:",d)),e._processOptions(c),e.root=c.root||"/",e._initConfig(c.config||d.config||{}),e._patchGalaxy(window.Galaxy),e._initLogger(e.options.loggerOptions||{}),e.debug("GalaxyApp.options: ",e.options),e.debug("GalaxyApp.config: ",e.config),e.debug("GalaxyApp.logger: ",e.logger),e._initLocale(),e.debug("GalaxyApp.localize: ",e.localize),e.config=c.config||{},e.debug("GalaxyApp.config: ",e.config),e._initUser(c.user||{}),e.debug("GalaxyApp.user: ",e.user),e._setUpListeners(),e.trigger("ready",e),e},h.prototype.defaultOptions={patchExisting:!0,root:"/"},h.prototype._processOptions=function(a){var b=this,c=b.defaultOptions;b.options={};for(var d in c)c.hasOwnProperty(d)&&(b.options[d]=a.hasOwnProperty(d)?a[d]:c[d]);return b},h.prototype._initConfig=function(a){var b=this;return b.config=a,b.config.debug=k||b.config.debug,b},h.prototype._patchGalaxy=function(a){var b=this;if(b.options.patchExisting&&a)for(var c in a)a.hasOwnProperty(c)&&(b[c]=a[c])},h.prototype._initLogger=function(a){var b=this;if(b.config.debug){a.consoleLogger=a.consoleLogger||console,a.consoleLevel=a.consoleLevel||e.MetricsLogger.ALL;try{a.consoleNamespaceWhitelist=localStorage.getItem(j).split(",")}catch(d){}}return b.logger=new e.MetricsLogger(a),b.config.debug&&(c.LoggableMixin.logger=b.logger),b},h.prototype._initLocale=function(a){var b=this;return b.debug("_initLocale:",a),b.localize=g,window._l=b.localize,b},h.prototype._initUser=function(a){var b=this;return b.debug("_initUser:",a),b.user=new d.User(a),b.user.logger=b.logger,b.currUser=b.user,b},h.prototype._setUpListeners=function(){var a=this;return a.lastAjax={},$(document).bind("ajaxSend",function(b,c,d){var e=d.data;try{e=JSON.parse(e)}catch(f){}a.lastAjax={url:location.href.slice(0,-1)+d.url,data:e}}),a},h.prototype.debugging=function(a){var b=this;try{if(void 0===a)return"true"===localStorage.getItem(i);if(a)return localStorage.setItem(i,!0),!0;localStorage.removeItem(i),b.debuggingNamespaces(null)}catch(c){console.log(g("localStorage not available for debug flag retrieval"))}return!1},h.prototype.debuggingNamespaces=function(a){var b=this;try{if(void 0===a){var c=localStorage.getItem(j);return"string"==typeof c?c.split(","):[]}null===a?localStorage.removeItem(j):localStorage.setItem(j,a);var d=b.debuggingNamespaces();return b.logger&&(b.logger.options.consoleNamespaceWhitelist=d),d}catch(e){console.log(g("localStorage not available for debug namespace retrieval"))}},h.prototype.toString=function(){var a=this.user?this.user.get("email")||"(anonymous)":"uninitialized";return"GalaxyApp("+a+")"},{GalaxyApp:h}});
//# sourceMappingURL=../maps/galaxy-app-base.js.map
static/scripts/layout/page.js
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define(["layout/masthead","layout/panel","mvc/ui/ui-modal","mvc/base-mvc"],function(a,b,c,d){var e=Backbone.View.extend(d.LoggableMixin).extend({_logNamespace:"layout",el:"body",className:"full-content",_panelIds:["left","center","right"],defaultOptions:{message_box_visible:!1,message_box_content:"",message_box_class:"info",show_inactivity_warning:!1,inactivity_box_content:""},initialize:function(a){this.log(this+".initialize:",a),_.extend(this,_.pick(a,this._panelIds)),this.options=_.defaults(_.omit(a,this._panelIds),this.defaultOptions)},$everything:function(){return this.$("#everything")},render:function(){return this.log(this+".render:"),this.$el.attr("scroll","no"),this.$el.html(this.template(this.options)),this.modal=new c.View,this.masthead=new a.GalaxyMasthead(this.options.config),Galaxy.modal=this.modal,Galaxy.masthead=this.masthead,this.options.message_box_visible&&this.messageBox(this.options.message_box_content,this.options.message_box_class),this.options.show_inactivity_warning&&this.inactivityWarning(this.options.inactivity_box_content),this.renderPanels(),this},messageBox:function(a,b){return a=a||"",b=b||"info",this.$el.addClass("has-message-box"),this.$("#messagebox").attr("class","panel-"+b+"-message").html(a).toggle(!!a),this},inactivityWarning:function(a){var b='<a href="'+Galaxy.root+'user/resend_verification">Resend verification.</a>';return this.$el.addClass("has-inactivity-box"),this.$("#inactivebox").html(a).append(" "+b).toggle(!!a),this},renderPanels:function(){var a=this;return $(".select2-hidden-accessible").remove(),this._panelIds.forEach(function(b){if(_.has(a,b)){var c=a[b];c.setElement("#"+b),c.render()}}),this},template:function(){return['<div id="everything" style="position: absolute; top: 0; left: 0; width: 100%; height: 100%;">','<div id="background"/>','<div id="messagebox" style="display: none;"></div>','<div id="inactivebox" class="panel-warning-message" style="display: none;"></div>',this.left?'<div id="left"/>':"",this.center?'<div id="center" class="inbound"/>':"",this.right?'<div id="right"/>':"","</div>",'<div id="DD-helper" style="display: none;"></div>',"<noscript>",'<div class="overlay overlay-background noscript-overlay">',"<div>",'<h3 class="title">Javascript Required for Galaxy</h3>',"<div>","The Galaxy analysis interface requires a browser with Javascript enabled.<br>","Please enable Javascript and refresh this page","</div>","</div>","</div>","</noscript>"].join("")},hideSidePanels:function(){this.left&&this.left.hide(),this.right&&this.right.hide()},toString:function(){return"PageLayoutView"}});return{PageLayoutView:e}});
//# sourceMappingURL=../../maps/layout/page.js.map
static/scripts/layout/panel.js
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@@ -1,2 +1,2 @@
define(["jquery"],function(a){"use strict";var b=a,c=160,d=800,e=function(a){this.$panel=a.panel,this.$center=a.center,this.$drag=a.drag,this.$toggle=a.toggle,this.left=!a.right,this.hidden=!1,this.hidden_by_tool=!1,this.saved_size=null,this.init()};return b.extend(e.prototype,{resize:function(a){this.$panel.css("width",a),this.left?this.$center.css("left",a):this.$center.css("right",a),document.recalc&&document.recalc()},do_toggle:function(){var a=this;this.hidden?(this.$toggle.removeClass("hidden"),this.left?this.$panel.css("left",-this.saved_size).show().animate({left:0},"fast",function(){a.resize(a.saved_size)}):this.$panel.css("right",-this.saved_size).show().animate({right:0},"fast",function(){a.resize(a.saved_size)}),a.hidden=!1):(a.saved_size=this.$panel.width(),document.recalc&&document.recalc(),this.left?this.$panel.animate({left:-this.saved_size},"fast"):this.$panel.animate({right:-this.saved_size},"fast"),this.left?this.$center.css("left",0):this.$center.css("right",0),a.hidden=!0,a.$toggle.addClass("hidden")),this.hidden_by_tool=!1},handle_minwidth_hint:function(a){var b=this.$center.width()-(this.hidden?this.saved_size:0);a>b?this.hidden||(this.do_toggle(),this.hidden_by_tool=!0):this.hidden_by_tool&&(this.do_toggle(),this.hidden_by_tool=!1)},force_panel:function(a){(this.hidden&&"show"==a||!this.hidden&&"hide"==a)&&this.do_toggle()},init:function(){function a(a){var b=a.pageX-e;e=a.pageX;var g=f.$panel.width(),h=f.left?g+b:g-b;h=Math.min(d,Math.max(c,h)),f.resize(h)}var e,f=this;f.$toggle.remove().appendTo("body"),f.$toggle.on("click",function(){f.do_toggle()}),this.$drag.on("mousedown",function(c){e=c.pageX,b("#DD-helper").show().on("mousemove",a).one("mouseup",function(){b(this).hide().off("mousemove",a)})}),window.force_left_panel=function(a){f.force_panel(a)},window.handle_minwidth_hint=function(a){f.handle_minwidth_hint(a)}}}),e});
define(["jquery","libs/underscore","libs/backbone","mvc/base-mvc"],function(a,b,c,d){"use strict";var e=a,f=160,g=800,h=c.View.extend(d.LoggableMixin).extend({_logNamespace:"layout",initialize:function(a){this.log(this+".initialize:",a),this.title=a.title||this.title||"",this.hidden=!1,this.savedSize=null,this.hiddenByTool=!1},$center:function(){return this.$el.siblings("#center")},$toggleButton:function(){return this.$(".unified-panel-footer > .panel-collapse")},render:function(){this.log(this+".render:"),this.$el.html(this.template(this.id))},template:function(){return[this._templateHeader(),this._templateBody(),this._templateFooter()].join("")},_templateHeader:function(){return['<div class="unified-panel-header" unselectable="on">','<div class="unified-panel-header-inner">','<div class="panel-header-buttons" style="float: right"/>','<div class="panel-header-text">',b.escape(this.title),"</div>","</div>","</div>"].join("")},_templateBody:function(){return'<div class="unified-panel-body"/>'},_templateFooter:function(){return['<div class="unified-panel-footer">','<div class="panel-collapse ',b.escape(this.id),'"/>','<div class="drag"/>',"</div>"].join("")},events:{"mousedown .unified-panel-footer > .drag":"_mousedownDragHandler","click .unified-panel-footer > .panel-collapse":"toggle"},_mousedownDragHandler:function(a){function b(a){var b=a.pageX-h;h=a.pageX;var e=c.$el.width(),i=d?e+b:e-b;i=Math.min(g,Math.max(f,i)),c.resize(i)}var c=this,d="left"===this.id,h=a.pageX;e("#DD-helper").show().on("mousemove",b).one("mouseup",function(){e(this).hide().off("mousemove",b)})},resize:function(a){return this.$el.css("width",a),this.$center().css(this.id,a),self},show:function(){if(this.hidden){var a=this,b={},c=this.id;return b[c]=0,a.$el.css(c,-this.savedSize).show().animate(b,"fast",function(){a.resize(a.savedSize)}),a.hidden=!1,a.$toggleButton().removeClass("hidden"),a}},hide:function(){if(console.debug("hide:",this,this.hidden),!this.hidden){var a=this,b={},c=this.id;return a.savedSize=this.$el.width(),b[c]=-this.savedSize,this.$el.animate(b,"fast"),this.$center().css(c,0),a.hidden=!0,a.$toggleButton().addClass("hidden"),a}},toggle:function(){var a=this;return a.hidden?a.show():a.hide(),a.hiddenByTool=!1,a},handle_minwidth_hint:function(a){console.debug("handle_minwidth_hint:",a);var b=this.$center().width()-(this.hidden?this.savedSize:0);return a>b?this.hidden||(this.toggle(),this.hiddenByTool=!0):this.hiddenByTool&&(this.toggle(),this.hiddenByTool=!1),self},force_panel:function(a){return console.debug("force_panel:",a),"show"==a?this.show():"hide"==a?this.hide():self},toString:function(){return"SidePanel("+this.id+")"}}),i=h.extend({id:"left"}),j=h.extend({id:"right"}),k=c.View.extend(d.LoggableMixin).extend({_logNamespace:"layout",initialize:function(a){this.log(this+".initialize:",a),this.prev=null},render:function(){this.log(this+".render:"),this.$el.html(this.template()),this.$("#galaxy_main").on("load",b.bind(this._iframeChangeHandler,this))},_iframeChangeHandler:function(a){var b=a.currentTarget,c=b.contentWindow&&b.contentWindow.location;c&&c.host&&(e(b).show(),this.prev&&this.prev.remove(),this.$("#center-panel").hide(),Galaxy.trigger("galaxy_main:load",{fullpath:c.pathname+c.search+c.hash,pathname:c.pathname,search:c.search,hash:c.hash}),this.trigger("galaxy_main:load",c))},display:function(a){this.prev&&this.prev.remove(),this.prev=a,this.$("#galaxy_main").hide(),this.$("#center-panel").scrollTop(0).append(a.$el).show(),this.trigger("center-panel:load",a)},template:function(){return['<div style="position: absolute; width: 100%; height: 100%">','<iframe name="galaxy_main" id="galaxy_main" frameborder="0" ','style="position: absolute; width: 100%; height: 100%;"/>','<div id="center-panel" ','style="display: none; position: absolute; width: 100%; height: 100%; padding: 10px; overflow: auto;"/>',"</div>"].join("")},toString:function(){return"CenterPanel"}});return{LeftPanel:i,RightPanel:j,CenterPanel:k}});
//# sourceMappingURL=../../maps/layout/panel.js.map
static/scripts/mvc/tools.js
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static/scripts/onload.js
+1 -1
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@@ -1,2 +1,2 @@
function replace_big_select_inputs(a,b,c){function d(a){var b=$(a),c={placeholder:"Click to select",closeOnSelect:!b.is("[MULTIPLE]"),dropdownAutoWidth:!0,containerCssClass:"select2-minwidth"};return a.select2(c)}jQuery.fn.select2&&(void 0===a&&(a=20),void 0===b&&(b=3e3),c=c||$("select"),c.each(function(){var c=$(this).not("[multiple]"),e=c.find("option").length;a>e||e>b||c.hasClass("no-autocomplete")||d(c)}))}function init_refresh_on_change(){$("select[refresh_on_change='true']").off("change").change(function(){var a=$(this),b=a.val(),c=a.attr("refresh_on_change_values");if(c){c=c.split(",");var d=a.attr("last_selected_value");if(-1===$.inArray(b,c)&&-1===$.inArray(d,c))return}$(window).trigger("refresh_on_change"),$(document).trigger("convert_to_values"),a.get(0).form.submit()}),$(":checkbox[refresh_on_change='true']").off("click").click(function(){var a=$(this),b=a.val(),c=a.attr("refresh_on_change_values");if(c){c=c.split(",");var d=a.attr("last_selected_value");if(-1===$.inArray(b,c)&&-1===$.inArray(d,c))return}$(window).trigger("refresh_on_change"),a.get(0).form.submit()}),$("a[confirm]").off("click").click(function(){return confirm($(this).attr("confirm"))})}window.jQuery=jQuery,window.$=jQuery,window._=_,window.Backbone=Backbone,window.Handlebars=Handlebars,console.debug("globals loaded:",window.jQuery,window.Backbone,"..."),window.Panel=require("panel"),_.extend(window,require("modal")),window.async_save_text=require("utils/async-save-text");var POPUPMENU=require("ui/popupmenu");window.make_popupmenu=POPUPMENU.make_popupmenu,window.make_popup_menus=POPUPMENU.make_popup_menus,window.init_tag_click_function=require("ui/autocom_tagging"),console.debug("galaxy globals loaded:",window.Panel),window.init_refresh_on_change=init_refresh_on_change,$(document).ready(function(){var a=$("#masthead ul.nav > li.dropdown > .dropdown-menu");console.debug("what?",a),$("body").on("click.nav_popups",function(b){if(a.hide(),$("#DD-helper").hide(),!$(b.target).closest("#masthead ul.nav > li.dropdown > .dropdown-menu").length){var c=$(b.target).closest("#masthead ul.nav > li.dropdown");c.length&&($("#DD-helper").show(),c.children(".dropdown-menu").show(),b.preventDefault())}}),init_refresh_on_change(),$.fn.tooltip&&($(".unified-panel-header [title]").tooltip({placement:"bottom"}),$("[title]").tooltip()),make_popup_menus(),replace_big_select_inputs(20,1500),$("a").click(function(){var a=$(this),b=parent.frames&&parent.frames.galaxy_main;if("galaxy_main"==a.attr("target")&&!b){var c=a.attr("href");c+=-1==c.indexOf("?")?"?":"&",c+="use_panels=True",a.attr("href",c),a.attr("target","_self")}return a})});
function replace_big_select_inputs(a,b,c){function d(a){var b=$(a),c={placeholder:"Click to select",closeOnSelect:!b.is("[MULTIPLE]"),dropdownAutoWidth:!0,containerCssClass:"select2-minwidth"};return a.select2(c)}jQuery.fn.select2&&(void 0===a&&(a=20),void 0===b&&(b=3e3),c=c||$("select"),c.each(function(){var c=$(this).not("[multiple]"),e=c.find("option").length;a>e||e>b||c.hasClass("no-autocomplete")||d(c)}))}function init_refresh_on_change(){$("select[refresh_on_change='true']").off("change").change(function(){var a=$(this),b=a.val(),c=a.attr("refresh_on_change_values");if(c){c=c.split(",");var d=a.attr("last_selected_value");if(-1===$.inArray(b,c)&&-1===$.inArray(d,c))return}$(window).trigger("refresh_on_change"),$(document).trigger("convert_to_values"),a.get(0).form.submit()}),$(":checkbox[refresh_on_change='true']").off("click").click(function(){var a=$(this),b=a.val(),c=a.attr("refresh_on_change_values");if(c){c=c.split(",");var d=a.attr("last_selected_value");if(-1===$.inArray(b,c)&&-1===$.inArray(d,c))return}$(window).trigger("refresh_on_change"),a.get(0).form.submit()}),$("a[confirm]").off("click").click(function(){return confirm($(this).attr("confirm"))})}window.jQuery=jQuery,window.$=jQuery,window._=_,window.Backbone=Backbone,window.Handlebars=Handlebars,window.panels=require("layout/panel"),_.extend(window,require("modal")),window.async_save_text=require("utils/async-save-text");var POPUPMENU=require("ui/popupmenu");window.make_popupmenu=POPUPMENU.make_popupmenu,window.make_popup_menus=POPUPMENU.make_popup_menus,window.init_tag_click_function=require("ui/autocom_tagging"),window.init_refresh_on_change=init_refresh_on_change,$(document).ready(function(){var a=$("#masthead ul.nav > li.dropdown > .dropdown-menu");$("body").on("click.nav_popups",function(b){if(a.hide(),$("#DD-helper").hide(),!$(b.target).closest("#masthead ul.nav > li.dropdown > .dropdown-menu").length){var c=$(b.target).closest("#masthead ul.nav > li.dropdown");c.length&&($("#DD-helper").show(),c.children(".dropdown-menu").show(),b.preventDefault())}}),init_refresh_on_change(),$.fn.tooltip&&($(".unified-panel-header [title]").tooltip({placement:"bottom"}),$("[title]").tooltip()),make_popup_menus(),replace_big_select_inputs(20,1500),$("a").click(function(){var a=$(this),b=parent.frames&&parent.frames.galaxy_main;if("galaxy_main"==a.attr("target")&&!b){var c=a.attr("href");c+=-1==c.indexOf("?")?"?":"&",c+="use_panels=True",a.attr("href",c),a.attr("target","_self")}return a})});
//# sourceMappingURL=../maps/onload.js.map
templates/base/base_panels.mako
+3 -3
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@@ -53,7 +53,7 @@
${h.js(
'libs/require',
## TODO: remove when all libs are required directly in modules
'bundled/libs.bundled',
'bundled/libs.bundled'
)}
<script type="text/javascript">
@@ -114,12 +114,12 @@
<script type="text/javascript">
%if self.has_left_panel:
var lp = new Panel( { panel: $("#left"), center: $("#center"), drag: $("#left > .unified-panel-footer > .drag" ), toggle: $("#left > .unified-panel-footer > .panel-collapse" ) } );
var lp = new panels.LeftPanel({});
force_left_panel = function( x ) { lp.force_panel( x ) };
%endif
%if self.has_right_panel:
var rp = new Panel( { panel: $("#right"), center: $("#center"), drag: $("#right > .unified-panel-footer > .drag" ), toggle: $("#right > .unified-panel-footer > .panel-collapse" ), right: true } );
var rp = new panels.RightPanel({});
window.handle_minwidth_hint = function( x ) { rp.handle_minwidth_hint( x ) };
force_right_panel = function( x ) { rp.force_panel( x ) };
%endif
templates/js-app.mako
+14 -52
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@@ -31,7 +31,19 @@
</head>
<body scroll="no" class="full-content">
${ body_template( panels=panels, masthead=masthead ) }
<div id="everything" style="position: absolute; top: 0; left: 0; width: 100%; height: 100%;">
## TODO: needed?
<div id="background"></div>
%if masthead:
<div id="masthead" class="navbar navbar-fixed-top navbar-inverse"></div>
<div id="messagebox" style="display: none;"></div>
<div id="inactivebox" class="panel-warning-message" style="display: none;"></div>
%endif
</div><!--end everything-->
<div id='DD-helper' style="display: none;"></div>
${ js_disabled_warning() }
## ${ h.js( 'bundled/libs.bundled', 'bundled/galaxy.bundled' ) }
<script type="text/javascript" src="/static/scripts/bundled/libs.bundled.js"></script>
@@ -106,41 +118,7 @@
</%def>
## ============================================================================
<%def name="body_template( panels=None, masthead=True )">
<%
panels = panels or [ 'center', 'right' ]
if 'left' in panels or 'right' in panels and 'center' not in panels:
panels.append( 'center' )
%>
<div id="everything" style="position: absolute; top: 0; left: 0; width: 100%; height: 100%;">
## TODO: needed?
<div id="background"></div>
%if masthead:
<div id="masthead" class="navbar navbar-fixed-top navbar-inverse"></div>
## TODO: needed?
<div id="messagebox" style="display: none;"></div>
## TODO: needed?
<div id="inactivebox" class="panel-warning-message" style="display: none;"></div>
%endif
<!-- content sections -->
%if 'left' in panels:
${ side_panel( 'left' ) }
%endif
%if 'center' in panels:
<div id="center" class="inbound" style="background: aliceblue"></div>
%endif
%if 'right' in panels:
${ side_panel( 'right' ) }
%endif
</div><!--end everything-->
<div id='DD-helper' style="display: none;"></div>
<%def name="js_disabled_warning()">
<noscript>
<div class="overlay overlay-background noscript-overlay">
<div>
@@ -152,20 +130,4 @@
</div>
</div>
</noscript>
</%def>
<%def name="side_panel( side )">
<div id="${side}">
<div class="unified-panel-header" unselectable="on">
<div class='unified-panel-header-inner'></div>
</div>
<div class="unified-panel-body">
</div>
<div class="unified-panel-footer">
## TODO: use child selector and remove the side class here
<div class="panel-collapse ${side}"></div>
<div class="drag"></div>
</div>
</div>
</%def>
templates/webapps/galaxy/galaxy.panels.mako
+5 -5
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@@ -59,9 +59,9 @@
'bundled/libs.bundled',
)}
${h.js(
'libs/jquery/jquery-ui',
'libs/d3',
'libs/require',
'libs/jquery/jquery-ui',
'libs/d3',
'libs/require',
)}
## send errors to Sntry server if configured
@@ -149,13 +149,13 @@
## configure left panel
%if self.galaxy_config['left_panel']:
var lp = new Panel( { panel: $("#left"), center: $("#center"), drag: $("#left > .unified-panel-footer > .drag" ), toggle: $("#left > .unified-panel-footer > .panel-collapse" ) } );
var lp = new panels.LeftPanel({});
force_left_panel = function( x ) { lp.force_panel( x ) };
%endif
## configure right panel
%if self.galaxy_config['right_panel']:
var rp = new Panel( { panel: $("#right"), center: $("#center"), drag: $("#right > .unified-panel-footer > .drag" ), toggle: $("#right > .unified-panel-footer > .panel-collapse" ), right: true } );
var rp = new panels.RightPanel({});
window.handle_minwidth_hint = function( x ) { rp.handle_minwidth_hint( x ) };
force_right_panel = function( x ) { rp.force_panel( x ) };
%endif