opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-09-21 13:50:20 +08:00
Code Issues Packages Projects Releases Wiki Activity
58,048 Commits 72 Branches 243 Tags
d3b272fd102bd900df59bf4efdfd55caea9f397a
Commit Graph
58048 Commits
This Branch
This Branch
All Branches
Author SHA1 Message Date
John Chilton d3b272fd10 Merge pull request #13170 from mvdbeek/max_discovered_files 
Limit maximum number of discovered files per job
 2022-01-18 12:45:01 -05:00
David López 8f72ec5efb Merge pull request #12099 from knutwa-ext/iml_dataset_branch 
Add datatype iml_dataset subclassing html
 2022-01-18 16:08:35 +01:00
Marius van den Beek 4147382cae Merge pull request #13180 from mvdbeek/dev 
Merge 21.09 into dev
 2022-01-18 14:09:27 +01:00
mvdbeek 26a98ae8f4 Implement max_discovered_files 2022-01-18 11:49:00 +01:00
Marius van den Beek 210039e8ab Merge pull request #13166 from assuntad23/13140/bugfix/autopair-issues 
converting forward and reverse filters to reactive Vue array
 2022-01-18 11:40:44 +01:00
David López 2817fdb5b3 Simplify html extension check 
Simplified the check a bit here since `endswith` will cover the previous check and also I've removed the preceding `.` to make sure the old check is still covered.
 2022-01-18 11:39:34 +01:00
mvdbeek 9dcea35ae5 Show yaml files in preview 
The `application/yaml` mediatype might be the logical mediatype for yaml
(there's no standard yet), but we want to see a textual preview (in the
absence of a viewer).
Fixes https://github.com/galaxyproject/galaxy/issues/13168
 2022-01-17 19:10:49 +01:00
mvdbeek 7c4568fe90 Set collection update_time when replacing failed elements 
That allows the new history to update the collection.
 2022-01-17 18:59:40 +01:00
mvdbeek 8a16c56cac Fix re-run with rerun_remap_job_id hiding collection 
Fixes https://github.com/galaxyproject/galaxy/issues/13052
 2022-01-17 18:59:39 +01:00
Marius van den Beek be14264198 Merge pull request #12978 from bernt-matthias/topic/lint-context 
provide more context for lint context
 2022-01-17 13:46:17 +01:00
Matthias Bernt 48abc4abd8 cleanup rebase mistakes 2022-01-17 11:15:14 +01:00
Matthias Bernt c37dcd1e98 add TODO for later 2022-01-17 11:07:48 +01:00
Matthias Bernt 57ab0e699a check number of info and valid messages in all tests 2022-01-17 11:07:48 +01:00
Matthias Bernt 16070ccbb5 full test coverage for tests linter 2022-01-17 11:07:48 +01:00
Matthias Bernt a73de59c9d small restructuring of inputs linter test 2022-01-17 11:07:48 +01:00
Matthias Bernt 4fe978198f full test coverage for xml_order linter 2022-01-17 11:07:48 +01:00
Matthias Bernt 706048c62f full test coverage for outputs linter 
- fix warning for invalid cheetah placeholder
 2022-01-17 11:07:48 +01:00
Matthias Bernt f699676534 full test coverage for command linter 
- info->warn for deprecated interpreter attribute
- add error for empty command text
- fix check for TODO in command
 2022-01-17 11:07:48 +01:00
Matthias Bernt 994cc17156 full test coverage for citations linter 
- and add warning if no valid citation is found
 2022-01-17 11:07:48 +01:00
Matthias Bernt 9d7f3a1d25 full test coverage for stdio 2022-01-17 11:07:48 +01:00
Matthias Bernt 5b34abf81f fix rebase error 2022-01-17 11:07:48 +01:00
Matthias Bernt 96f0e72887 full coverage of inputs linter 
and several small improvements

- lint for empty param name / type
- distinct option definition possibilities for selects and selects in
conditionals
- condtional parameter
  - check for exactly 1 conditional param (before only 0)
  - warn if boolean select param for conditional
  - warn for optional and multiple select
 2022-01-17 11:07:48 +01:00
Matthias Bernt 1b5f120189 full test coverage for help linter 2022-01-17 11:06:10 +01:00
Matthias Bernt 93b417643e general linter: full test coverage 
- more specific error message for whitespace in pre/suffix in tool
version and name
- do not pront valid tool id message if whitespaces are found
 2022-01-17 11:06:10 +01:00
Matthias Bernt d2903f2ba7 check tool_id only if present 2022-01-17 11:05:09 +01:00
Matthias Bernt a2ace33f50 make linter test xml more minimal 
ie include only the tested features
 2022-01-17 11:05:09 +01:00
Matthias Bernt fd3cc41678 small fix for tests linter 2022-01-17 11:03:49 +01:00
Matthias Bernt 109051935f add xpath 2022-01-17 11:03:49 +01:00
Matthias Bernt a7edfaac1b remove bare excepts 2022-01-17 11:03:06 +01:00
Matthias Bernt 96654f8882 provide more context for lint context 
line number and xpath
 2022-01-17 11:03:06 +01:00
Assunta DeSanto d0d46c4ef9 running prettier 2022-01-16 09:58:00 -05:00
Dannon 1a4b19a726 Merge pull request #13121 from gregvonkuster/destid_reports 
Add job reports for node types and execution times
 2022-01-14 22:21:24 -05:00
Assunta DeSanto 464257c43b adding test case that types in filters 2022-01-14 16:34:38 -05:00
Assunta DeSanto 4b981cdd8c referencing forward/reverse filter instead 2022-01-14 14:01:33 -05:00
Marius van den Beek f33fe93bde Merge pull request #13094 from bernt-matthias/topic/duplicated_option 
Allow duplicated static options
 2022-01-14 19:34:14 +01:00
Dannon 92250ce92d Merge pull request #12937 from OlegZharkov/formslider 
Vuefy Number and Slider Form inputs
 2022-01-14 13:24:21 -05:00
Marius van den Beek 03ed4c6a8d Merge pull request #13165 from ic4f/dev_backref_to_backpopulates 
Replace backref with back_populates
 2022-01-14 18:39:21 +01:00
Nicola Soranzo 4c03520f05 Merge pull request #13129 from mvdbeek/goodbye_dave 
End of an era 😿
 2022-01-14 17:16:35 +00:00
Nicola Soranzo da54f2be42 Merge pull request #13128 from mvdbeek/goodbye_oleg 2022-01-14 17:08:49 +00:00
davelopez 9500c2dbb7 Merge branch 'dev' into iml_dataset_branch 2022-01-14 17:29:26 +01:00
David López 434ef6fa3b Use lowercase true in XML 2022-01-14 17:02:34 +01:00
Marius van den Beek 66fafe872b Merge pull request #13080 from kxk302/resource_name 
Fix issue with uploading cached file to irods
 2022-01-14 16:18:11 +01:00
Marius van den Beek 247d7156db Merge pull request #12698 from ic4f/dev_sa20prep_1 
Misc. fixes for SQLAlchemy 2.0
 2022-01-14 15:45:11 +01:00
Dannon Baker 07e12452c3 Format 2022-01-14 09:28:30 -05:00
Oleg Zharkov 40131ad187 show error above the input field 2022-01-14 09:27:54 -05:00
Oleg Zharkov 76528957c8 make alert non-dismissible 2022-01-14 09:27:54 -05:00
Oleg Zharkov 1b295a8a6e change alert to info 2022-01-14 09:27:54 -05:00
oleg 343db089cc fix 0 prop usecase, implement FormNumber test 2022-01-14 09:27:54 -05:00
oleg 386806afe8 fix inability to mark and replace 2022-01-14 09:27:54 -05:00
oleg 851cbf896e remove rebase artifacts 2022-01-14 09:27:54 -05:00