opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-10-29 17:42:12 +08:00
Code Issues Packages Projects Releases Wiki Activity
63,358 Commits 63 Branches 246 Tags
d157331ffd0ff14c21c7146cdd1e396a07391a23
Commit Graph
63358 Commits
This Branch
This Branch
All Branches
Author SHA1 Message Date
Dannon Baker d157331ffd Merge remote-tracking branch 'upstream/release_22.05' into dev 2022-10-13 07:56:53 -04:00
Dannon 64b75762f1 Merge pull request #14786 from davelopez/22.05_fix_deleted_library_buttons 
[22.05] Fix deleted library buttons visibility
 2022-10-13 07:39:19 -04:00
davelopez 35c9dc434b Fix deleted library buttons visibility 
Also:
- Unify Undelete button size
- Fix aria-label warning
 2022-10-13 11:44:51 +02:00
Marius van den Beek 5f30153180 Merge pull request #14784 from jmchilton/sync_job_script 
Synchronize job script module with Pulsar fixes.
 2022-10-13 10:19:32 +02:00
Marius van den Beek 08b6c67737 Merge pull request #14782 from nsoranzo/skip_tests_if_bio.tools_down 
Skip 2 unit tests if bio.tools is down
 2022-10-13 10:17:45 +02:00
Dannon 7aec7175d3 Merge pull request #14725 from guerler/fix_rerun_reload 
Allow to force push client routes
 2022-10-12 21:11:46 -04:00
Dannon b1fcc1c267 Merge pull request #14775 from itisAliRH/workflow-import-composition 
Migrate `workflow import` to composition API
 2022-10-12 20:07:24 -04:00
John Chilton 5dde30a9db Synchronize job script module with Pulsar fixes. 
- Allows memory_statement.log to be written to a better location than the working directory.
- Allow Pulsar to handle home directory outside the command_factory abstraction.
 2022-10-12 14:36:57 -04:00
Nicola Soranzo a5ff54489c Set default verbosity of pytest to 1 
This is equivalent to the `-v` option, which e.g. shows each test inside a
file as a separate line in the output, showing the reason why a test was
skipped.

xref. https://docs.pytest.org/en/7.1.x/how-to/output.html#verbosity
 2022-10-12 18:13:47 +01:00
Nicola Soranzo c9e5a89c15 Skip unit tests requiring bio.tools if it's down 2022-10-12 18:13:47 +01:00
Nicola Soranzo 847946a887 Move `skip_if_site_down` test decorator to be reusable in unit tests 
Also:
- Add type annotations
 2022-10-12 18:13:46 +01:00
Nicola Soranzo d266eb7f80 Add missing package requirements 
Packages that are imported directly in galaxy-tool-util that were already
required through the galaxy-util dependency.
 2022-10-12 18:13:46 +01:00
Nicola Soranzo c810ebf9e1 Make 2 test decorators usable on both functions and methods 2022-10-12 18:13:45 +01:00
David López f733734299 Merge pull request #14736 from jmchilton/ts_service_models_2 
Migrate index and show tool shed repositories endpoints to Pydantic and FastAPI
 2022-10-12 18:25:14 +02:00
Alireza Heidari 674f4d7378 fix integration_selenium tests 2022-10-12 14:39:01 +02:00
Marius van den Beek 258479a824 Merge pull request #14778 from dannon/fix-history-disappearing-anchor 
[22.05] Fix disappearing right anchor
 2022-10-12 08:38:46 +02:00
Dannon Baker 21b4ed92e8 Fix disappearing right anchor 2022-10-11 17:27:18 -04:00
Nicola Soranzo a81d680cca Merge branch 'release_22.05' into dev 2022-10-11 21:34:31 +01:00
Dannon bbac935f50 Merge pull request #14769 from martenson/admin-jobs-page 
improve UX of admin job page
 2022-10-11 14:17:11 -04:00
Dannon a6acbffee1 Merge pull request #14549 from ElectronicBlueberry/tool-form-improvements 
Tool form improvements
 2022-10-11 11:54:32 -04:00
Alireza Heidari 35e720b5cf Update WorkflowList.vue 2022-10-11 16:04:37 +02:00
Alireza Heidari fe3d02fe22 Delete rxjsAxios.js 
`rxjs` completely deleted from `workflow` components
 2022-10-11 15:34:44 +02:00
Dannon 1221904383 Merge pull request #14703 from itisAliRH/store-multi-view-selected-list 
Storing selected histories in multiple view into local storage
 2022-10-11 09:30:22 -04:00
Alireza Heidari 672564bf90 remove not used services from Workflow/services and replace getAppRoot with safePath 
and update components uses this services files
 2022-10-11 15:28:47 +02:00
Dannon 15364b72c7 Merge pull request #14752 from guerler/safe_path_upgrade 
Align url handling for more consistency
 2022-10-11 09:15:25 -04:00
Dannon 3574b08d5b Merge pull request #14766 from xtrojak/visualisation_visjs_transition_system 
[Visualization] visjs-based transition system visualization
 2022-10-11 09:06:59 -04:00
Nicola Soranzo b31e2f02f2 Merge branch 'release_22.01' into release_22.05 2022-10-11 13:28:32 +01:00
Dannon 577a7d198a Merge pull request #14773 from nsoranzo/release_22.01_fix_provenance_follow 
[22.01] Fix dataset provenance API when ``follow=False``
 2022-10-11 08:01:10 -04:00
Dannon Baker d0bebf23ba Minor stop job message tweak 2022-10-11 07:53:31 -04:00
Alireza Heidari b3d646bfe1 update TrsImport and TrsSearch routes 2022-10-11 12:26:02 +02:00
Alireza Heidari e0100476b4 update WorkflowImport ui 2022-10-11 12:25:45 +02:00
Alireza Heidari 29a808fc74 Delete trsMixin.js 2022-10-11 12:25:18 +02:00
Alireza Heidari daa3f4d0d0 migrate TrsTool to vue composition api 2022-10-11 12:25:07 +02:00
Alireza Heidari f5244bcba3 migrate TrsServerSelection to vue composition api 2022-10-11 12:24:21 +02:00
Alireza Heidari 662e60bc5b migrate TrsSearch to vue composition api 2022-10-11 11:34:59 +02:00
Alireza Heidari d4d7e1e982 migrate TrsImport to vue composition api 2022-10-11 11:33:14 +02:00
Alireza Heidari 08af75743d Create FromFileOrUrl.vue 2022-10-11 11:01:37 +02:00
Nicola Soranzo bb3006df87 Fix dataset provenance API when `follow=False` 2022-10-11 00:45:37 +01:00
Martin Cech 79d3ce3ffb Merge pull request #14665 from itisAliRH/scroll-shadow-in-multiple-view 
add scroll shadow on the right and left sides
 2022-10-11 00:41:24 +02:00
Martin Cech 11ac6cd7c6 Merge pull request #14755 from jdavcs/dev_config_file 
Do not load sample config file; assign correct config paths
 2022-10-10 20:29:10 +02:00
John Chilton 552f0cfd61 Migrate index and show install repository endpoints to Pydantic+FastAPI. 2022-10-10 11:19:18 -04:00
John Chilton 84005605c8 Extend tool shed install testing to include index API. 2022-10-10 11:19:18 -04:00
John Chilton 649c9913f6 Typing for uses_shed_api.py 2022-10-10 10:45:08 -04:00
John Chilton b827f0be6c Reuse a constant in uses_shed_api.py. 2022-10-10 10:45:08 -04:00
Marius van den Beek 595e8f1479 Merge pull request #14701 from davelopez/fix_subworkflow_tool_version_update 
[22.05] Fix tool version inconsistency when downloading workflows with missing outdated tools
 2022-10-10 12:51:54 +02:00
Nicola Soranzo c4a317a974 Merge pull request #14745 from galaxybot/dev_auto_update_dependencies 
Update Python dependencies
 2022-10-08 14:06:56 +01:00
galaxybot ccb03950a3 Update Python dependencies 2022-10-08 03:40:06 +00:00
Martin CechandAysam Guerler 6afebbc38b Apply suggestions from code review 
Co-authored-by: Aysam Guerler <aysam.guerler@gmail.com>
 2022-10-08 02:41:02 +02:00
Martin Cech 5f2a704ade prtr 2022-10-07 14:46:08 -07:00
Martin Cech fb1a41db70 improve UX of admin job page 
- remove the label-for attribute which was the cause of the UX bug when
the switch would be triggered by click on the form-group label
- deduplicate and reorder the interface
- clarify some language

fixes #13774
 2022-10-07 14:03:35 -07:00