John Chilton
ccf73a577e
Fix search reference in core.galaxy_ui.yaml for #8368
2019-09-04 14:27:11 -04:00
Daniel Blankenberg
7732faec07
more realtimetool --> interactivetool
2019-08-20 17:17:11 -04:00
Daniel Blankenberg
55c929768c
more realtime to interactivetools name changes
2019-08-20 16:58:55 -04:00
Daniel Blankenberg
4bda4c92bd
Make InteractiveTools enable-able.
2019-08-20 14:57:45 -04:00
Daniel Blankenberg
c3c4aefcbd
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools
2019-08-20 13:44:44 -04:00
Daniel Blankenberg
0ba4ca5175
cleanup comments
2019-08-14 10:08:40 -04:00
Björn Grüning
c34fce8a5e
add some more comments
2019-08-14 09:36:27 +02:00
Björn Grüning
2fd4c13aba
enhance documentation for developers
2019-08-14 09:32:05 +02:00
Daniel Blankenberg
0e5892c5ca
Update galaxy.yml.realtime example with outputs_to_working_directory: true
2019-08-13 14:45:39 -04:00
Daniel Blankenberg
e04e03d772
Don't set user in example interactive tool job_conf.xml
2019-07-25 14:59:36 -04:00
will
79bc49e90c
add role="button" to anchor tag buttons and revert all anchor tag links to use href="#"
2019-07-16 17:04:47 -04:00
will
e20ad0a746
remove extra character in html
2019-07-16 15:21:33 -04:00
will
c4024e6535
Change all instance of href="#" to href="javascript:void(0)"
2019-07-14 16:33:13 -04:00
Daniel Blankenberg
56aab88923
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools
2019-07-11 17:04:17 -04:00
Nate Coraor
e75f2b0895
Symlink sample configs back to config/
2019-07-08 10:20:01 +02:00
Nate Coraor
b6358f5333
Move remaining sample configs to lib/galaxy/config/sample
2019-07-08 10:19:11 +02:00
Daniel Blankenberg
75bc929693
Add 404 when InteractiveTool route doesn't exist or can't be accessed
2019-07-07 18:46:40 +02:00
Daniel Blankenberg
f231e42c48
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools
2019-07-05 16:43:01 +02:00
Nate Coraor
37522f5e8e
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into installable
2019-07-05 16:05:17 +02:00
Nate Coraor
cdb9040e26
Merge remote-tracking branch 'origin/dev' into installable
2019-07-05 15:51:15 +02:00
Marius van den Beek
95cbaab03e
Merge pull request #8229 from astrovsky01/kallistobus
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Kallistobus
2019-06-28 11:18:40 +02:00
Alexander OSTROVSKY
eeee73bda5
changed to kallisto.ec and kallisto.idx
2019-06-26 09:09:21 -04:00
Alexander OSTROVSKY
bb11350f9e
added datatypes for bustools and kallisto bus
2019-06-26 09:09:21 -04:00
Sergey Golitsynskiy
6f167a2e8d
Run make config-rebuild to update config/docs
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This is to update galaxy.yml.sample and galaxy_options.rst to be
consistent with the latest update to config_schema.yml (#5651edc)
(generated with make config-rebuild)
2019-06-25 00:18:21 -04:00
Nicola Soranzo
a625e8fda5
Merge branch 'release_19.05' into dev
2019-06-24 18:29:37 +01:00
Ryan Velazquez and Marius van den Beek
f920a20ce3
Update config/datatypes_conf.xml.sample
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Co-Authored-By: Marius van den Beek <m.vandenbeek@gmail.com >
2019-06-20 09:28:39 -04:00
rdvelazquez
a1664352c8
add hyphy_json_results datatype
2019-06-18 14:04:28 -04:00
Marius van den Beek
90f3c078ec
Merge pull request #8086 from astrovsky01/ckpt
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Ckpt
2019-06-17 15:20:58 +02:00
Daniel Blankenberg
ccc4fc482f
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools
2019-06-06 17:39:45 -04:00
Nuwan Goonasekera
4a7708b7e0
Fix wording for pod retries while maintaining backward compatibility
2019-06-03 14:36:44 +05:30
Aysam Guerler
a763c89180
Merge pull request #8035 from martenson/changesets-search-index
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enhance TS repo search capabilities
2019-05-30 23:25:14 -04:00
Daniel Blankenberg
b00cff00c9
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools
2019-05-30 16:09:56 -04:00
Nate Coraor
51b39b82e6
Merge remote-tracking branch 'upstream/release_19.05' into dev
2019-05-30 15:03:50 -04:00
Nate Coraor
bff203f48c
Merge remote-tracking branch 'upstream/release_19.01' into release_19.05
2019-05-30 15:03:00 -04:00
Nate Coraor
dfb591caf6
Document the handler max_grab config param
2019-05-30 09:18:42 -04:00
Martin Cech
676d913c05
add option to specify category boost for searching repos
2019-05-29 16:20:33 -04:00
Will Simpson
738579e432
Refactor comments in sample object stores to remove nested comments.
2019-05-21 14:31:51 -07:00
Daniel Blankenberg
d1f1391001
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools
2019-05-20 10:03:21 -04:00
Björn Grüning
b8f9d9a75c
Merge pull request #7993 from msauria/mcooler
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Add mcool datatypeand extend h5 tool output testing
2019-05-18 10:11:37 +02:00
Nicola Soranzo
75d9e33363
Merge branch 'release_19.05' into dev
2019-05-17 10:10:16 +01:00
Alex Ostrovsky and Nicola Soranzo
2ba9646710
Update config/datatypes_conf.xml.sample
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-05-16 07:06:00 -04:00
Andreas Skorczyk
a213c06c5f
Fixed wrong example for amqp_ack_republish_time
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"amqp_republish_time" should be "amqp_ack_republish_time "
2019-05-16 12:08:24 +02:00
Alexander OSTROVSKY
efebceb7c1
ckpt as a subclass
2019-05-15 09:16:55 -04:00
Daniel Blankenberg
7c1e0091c0
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools
2019-05-15 08:39:28 -04:00
Alexander OSTROVSKY
3cecb466c6
tensorflow checkpoint file support
2019-05-14 16:50:51 -04:00
Bjoern Gruening
718f5f048c
change cellxgene Container to work with the IE tools
2019-05-13 14:52:41 -04:00
Daniel Blankenberg
7376cc9fd7
Add docs and example job config.
2019-05-13 14:36:31 -04:00
James Taylor
610b7678da
cellxgene GIE: use API to get datasets.
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No longer requires volume mounts, so useable on main. Also updates to
latest version of cellxgene in container.
2019-05-13 14:25:51 -04:00
Daniel Blankenberg
5fd9ef42df
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools
2019-05-13 09:02:38 -04:00
Nicola Soranzo
c82749688e
Merge branch 'release_19.05' into dev
2019-05-11 14:05:55 +01:00
John Chilton