Commit Graph
18748 Commits
Author SHA1 Message Date
Airistotal cc2cd0fb01 Merge branch 'dev' of https://github.com/Airistotal/galaxy into Reports_homepage
Conflicts:
	static/scripts/reports_webapp/run_stats.js
2015-07-29 16:12:31 -05:00
Daniel e3b1302606 Merge pull request #3 from dannon/Airistotal-Reports_homepage
Several fixes necessary for merging.
2015-07-29 16:07:25 -05:00
Airistotal 8d5ef14d4f Changed spacing 2015-07-29 16:06:23 -05:00
Dannon Baker 951ac2d3d8 Fix incorrect absolute paths in reports styles. 2015-07-29 16:08:21 -04:00
Dannon Baker 29d7f8be7a trim whitespace 2015-07-29 16:04:58 -04:00
Dannon Baker 8ae3406f41 Fix inclusion of new reports charts javascript file to not use a static path. 2015-07-29 16:01:57 -04:00
Dannon Baker 09f0aaf371 Run grunt. 2015-07-29 15:53:31 -04:00
Dannon Baker 9c3be3efb4 Merge branch 'Reports_homepage' of https://github.com/Airistotal/galaxy into Airistotal-Reports_homepage 2015-07-29 15:46:06 -04:00
Dannon Baker 96836156fe Merge pull request #516 from carlfeberhard/fix.taggable-anon
Managers, taggable: make anon set_tags fail silently
2015-07-29 14:26:44 -04:00
Björn Grüning c62db51873 Merge pull request #517 from blankenberg/multi-uninstall
Allow uninstalling multiple toolshed repositories at a time …
2015-07-29 16:27:35 +02:00
carlfeberhard 2ddb97091d Merge pull request #510 from dannon/whitelist_tools
Whitelist for tools
2015-07-28 16:44:40 -04:00
Daniel Blankenberg 1e6c49b277 Allow uninstalling multiple toolshed repositories at a time within the Galaxy UI, using checkboxes with grid multi-actions. 2015-07-28 16:22:16 -04:00
Dannon Baker 16928704e6 Merge pull request #515 from nsoranzo/dev
Restore line wrongly removed in fa7c5c5 and again in 9805294 .
2015-07-28 15:32:27 -04:00
Carl Eberhard 1c727a4b6b Managers, taggable: make anon set_tags fail silently 2015-07-28 15:24:02 -04:00
Dannon Baker 48a2566305 Update commentary per @nsoranzo's suggestion, thanks 2015-07-28 15:19:30 -04:00
Nicola Soranzo adaf150c0f Restore line wrongly removed in fa7c5c531e and again in 9805294f97 . Reorder imports. 2015-07-28 20:17:10 +01:00
Airistotal c1fb360437 Refactored out dead code 2015-07-28 11:58:08 -05:00
Airistotal 3d335f810c Fix for annoying flake error #226 2015-07-28 11:25:45 -05:00
Airistotal 6849970cec Automatic x axis creation was inconsistent, changed to manual x axis creation 2015-07-28 11:20:12 -05:00
Eric Rasche 0ff497cdb9 Merge pull request #512 from nitesh1989/dev
Fix: rdata extension type
2015-07-28 16:01:38 +01:00
nitesh1989 484099d41f Fix: Typo the other way. Supposed to be "RData"
Ref: https://stat.ethz.ch/R-manual/R-devel/library/base/html/save.html
2015-07-28 10:28:42 -04:00
nitesh1989 e382378140 Fix: rdata extension type 2015-07-28 10:16:10 -04:00
Dannon Baker 0de044dc09 Force sanitization even when whitelisted for imported datasets, since we can't necessarily trust the archive contents. 2015-07-27 16:30:57 -04:00
Eric Rasche e8b267b931 Merge pull request #509 from guerler/fix_numpad_000
Add numpad support to integer inputs
2015-07-27 15:10:17 -05:00
guerler 638ef77b3c Add numpad key codes to ui-slider element 2015-07-27 15:33:53 -04:00
Dannon Baker abe5571d43 Kick message to control queue to reload sanitize whitelist in multiprocess mode. 2015-07-27 14:39:07 -04:00
Dannon Baker 5280393708 Slight tweak to message to bold sanitize_all_html 2015-07-27 14:36:04 -04:00
Dannon Baker 15618d6d22 Add some help text, hopefully *just* scary enough. 2015-07-27 14:23:04 -04:00
Eric Rasche c35a5f57dc Merge pull request #500 from carlfeberhard/int_envs.seperate
Interactive environments: allow their own static base url
2015-07-27 12:12:52 -05:00
Carl Eberhard 054b4d58c5 Interactive environments: correct app_root 2015-07-27 13:07:15 -04:00
Dannon Baker 8d47c0b273 Coerce incoming param(s) to a list (otherwise python will iterate over string and not actually add any tools to the list, obviously) 2015-07-27 12:55:50 -04:00
Dannon Baker 58766abe64 Use config-specified file instead of old hardcoded one 2015-07-27 12:49:13 -04:00
Carl Eberhard aa8643014a Interactive environments: move static base url from 'visualizations' to 'interactive_environments' for int env plugins 2015-07-27 12:36:20 -04:00
Dannon Baker 674fb8c48b Forgot the template... 2015-07-27 12:14:06 -04:00
Dannon Baker e3bbae0e2a Update galaxy.ini.sample for the swap from list in galaxy.ini to a separate file. 2015-07-27 12:07:09 -04:00
Dannon Baker 29ce33ef34 Swap from list in universe to a separate config file, add simple UI for managing 2015-07-27 11:46:37 -04:00
John Chilton a0fc6e3acb Merge pull request #491 from carlfeberhard/ui.remove-select-button
History UI: do not render selector when there are no datasets to select
2015-07-27 15:52:09 +01:00
John Chilton 1b2fbad49f Merge pull request #496 from carlfeberhard/managers
Managers: containers and hda permissions
2015-07-27 13:56:05 +01:00
Dannon Baker 4afc756c61 Simplest possible tool whitelist implementation 2015-07-27 08:19:39 -04:00
Dannon Baker 18b058a496 Merge branch 'release_15.07' into dev 2015-07-24 19:18:08 -04:00
Dannon Baker 349378a543 Adjust comment for flake8 2015-07-24 19:17:41 -04:00
jgoecks 80f4bd7f3f Fix BBI data provider underflow bug when computing standard deviation 2015-07-24 19:17:30 -04:00
Dannon Baker 54a1de7758 Merge pull request #499 from jgoecks/bbi-sd-underflow-bug
Fix BBI data provider underflow bug when computing standard deviation
2015-07-24 18:30:04 -04:00
Jeremy Goecks 59a3804f09 Merge pull request #1 from dannon/bbi-sd-underflow-bug
Adjust comment for flake8
2015-07-24 18:21:04 -04:00
Dannon Baker 28a544c50b Adjust comment for flake8 2015-07-24 17:23:44 -04:00
jgoecks e36d1c2e0e Fix BBI data provider underflow bug when computing standard deviation 2015-07-24 16:45:18 -04:00
Dannon Baker 24360176bd Merge. 2015-07-24 15:30:22 -04:00
Dannon Baker 1c04e1498b Merge pull request #490 from carlfeberhard/release_15.07
[15.07] Histories: include owner annotations of hdas in published history dis…
2015-07-24 15:28:05 -04:00
Dannon Baker b5e7e1e615 Merge branch 'master' into dev 2015-07-24 10:39:30 -04:00
Dannon Baker 7144ed8f72 Merge branch 'release_15.05' 2015-07-24 10:37:18 -04:00